A V-Nitrogenase Variant Containing a Citrate-Substituted Cofactor

Chembiochem. 2020 Jun 15;21(12):1742-1748. doi: 10.1002/cbic.201900654. Epub 2019 Dec 16.

Abstract

Nitrogenases catalyze the ambient reduction of N2 and CO at its cofactor site. Herein we present a biochemical and spectroscopic characterization of an Azotobacter vinelandii V nitrogenase variant expressing a citrate-substituted cofactor. Designated VnfDGKCit , the catalytic component of this V nitrogenase variant has an αβ2 (δ) subunit composition and carries an 8Fe P* cluster and a citrate-substituted V cluster analogue in the αβ dimer, as well as a 4Fe cluster in the "orphaned" β-subunit. Interestingly, when normalized based on the amount of cofactor, VnfDGKCit shows a shift of N2 reduction from H2 evolution toward NH3 formation and an opposite shift of CO reduction from hydrocarbon formation toward H2 evolution. These observations point to a role of the organic ligand in proton delivery during catalysis and imply the use of different reaction sites/mechanisms by nitrogenase for different substrate reductions. Moreover, the increased NH3 /H2 ratio upon citrate substitution suggests the possibility to modify the organic ligand for improved ammonia synthesis in the future.

Keywords: V cluster; ammonia formation; citrate; nitrogenases; vanadium.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Azotobacter vinelandii / enzymology*
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • Citric Acid / metabolism*
  • Electron Spin Resonance Spectroscopy
  • Nitrogenase / chemistry
  • Nitrogenase / genetics
  • Nitrogenase / metabolism*
  • Protein Conformation

Substances

  • Bacterial Proteins
  • Citric Acid
  • vnfDGK protein, Azotobacter
  • Nitrogenase