Transcriptomic and cell wall proteomic datasets of rosettes and floral stems from five Arabidopsis thaliana ecotypes grown at optimal or sub-optimal temperature

Harold Duruflé; Philippe Ranocha; Thierry Balliau; Christophe Dunand; Elisabeth Jamet

doi:10.1016/j.dib.2019.104581

Transcriptomic and cell wall proteomic datasets of rosettes and floral stems from five Arabidopsis thaliana ecotypes grown at optimal or sub-optimal temperature

Data Brief. 2019 Sep 28:27:104581. doi: 10.1016/j.dib.2019.104581. eCollection 2019 Dec.

Authors

Harold Duruflé¹, Philippe Ranocha¹, Thierry Balliau², Christophe Dunand¹, Elisabeth Jamet¹

Affiliations

¹ Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, Auzeville, BP42617, 31326 Castanet Tolosan, France.
² PAPPSO, GQE - Le Moulon, INRA, Univ. Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, 91190 Gif-sur-Yvette, France.

Abstract

This article provides experimental data describing the RNA and the cell wall protein profiles of rosettes and flower stems of five Arabidopsis thaliana ecotypes. Four newly-described Pyrenees ecotypes [1] are analyzed in addition to the well-described and sequenced Columbia (Col) ecotype of A. thaliana. All five ecotypes have been grown at two different temperatures, 22 °C and 15 °C. We provide transcriptomics and cell wall proteomics data regarding (i) rosettes at the bolting stage, and (ii) floral stems at the first flower stage. These data are a valuable resource to study the adaptation of A. thaliana ecotypes to sub-optimal temperature growth conditions.

Keywords: Arabidopsis thaliana; Cell wall; Proteomics; Pyrenees ecotype; Transcriptomics.