Systems-level analysis identifies key regulators driving epileptogenesis in temporal lobe epilepsy

Genomics. 2020 Mar;112(2):1768-1780. doi: 10.1016/j.ygeno.2019.09.020. Epub 2019 Nov 1.

Abstract

Temporal lobe epilepsy (TLE) is the most prevalent and often devastating form of epilepsy. The molecular mechanism underlying the development of TLE remains largely unclear, which hinders the discovery of effective antiepileptogenic drugs. Here we adopted a systems-level approach integrating transcriptomic profiles of three epileptogenesis stages to identify key regulators underlying epilepsy progression. Associating stage-specific gene meta-signatures with brain cell-specialized modules revealed positive regulation of glial migration and adhesion, cytokine production, and neuron death, and downregulation of synaptic transmission and ion transport during epileptogenesis. We identified 265 key regulators driving these processes and 72 of them were demonstrated associating with seizure frequency and/or hippocampal sclerosis in human TLE. Importantly, the upregulation of FAM107A, LAMB2, LTBP1 and TGIF1, which are mainly involved in nervous system development, were found contributing to both conditions. Our findings present the evolution landscape of epileptogenesis and provide candidate regulators that may serve as potential antiepileptogenic targets.

Keywords: Antiepileptogenic targets; Epilepsy progression; Epileptogenesis; Key regulators; Network analysis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Brain / metabolism
  • Brain / physiopathology
  • Epilepsy, Temporal Lobe / genetics*
  • Epilepsy, Temporal Lobe / metabolism
  • Evolution, Molecular
  • Gene Expression Profiling
  • Genes, Tumor Suppressor
  • Homeodomain Proteins / genetics
  • Homeodomain Proteins / metabolism
  • Humans
  • Laminin / genetics
  • Laminin / metabolism
  • Latent TGF-beta Binding Proteins / genetics
  • Latent TGF-beta Binding Proteins / metabolism
  • Mice
  • Neuroglia / metabolism
  • Neuroglia / physiology
  • Neurons / metabolism
  • Neurons / physiology
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • Rats
  • Repressor Proteins / genetics
  • Repressor Proteins / metabolism
  • Synaptic Transmission
  • Systems Biology
  • Transcriptome*

Substances

  • FAM107A protein, human
  • Homeodomain Proteins
  • LTBP1 protein, human
  • Laminin
  • Latent TGF-beta Binding Proteins
  • Nuclear Proteins
  • Repressor Proteins
  • TGIF1 protein, human
  • laminin beta2