Extensively drug-resistant Acinetobacter baumannii isolated from intensive care units in northern Italy: a genomic approach to characterize new sequence types

Future Microbiol. 2019 Oct:14:1281-1292. doi: 10.2217/fmb-2019-0083. Epub 2019 Oct 22.

Abstract

Aim: This study aims to characterize clinical strains of Acinetobacter baumannii with an extensively drug-resistant phenotype. Methods: VITEK® 2, Etest® method and broth microdilution method for colistin were used. PCR analysis and multilocus sequence typing Pasteur scheme were performed to identify bla-OXA genes and genetic relatedness, respectively. Whole-genome sequencing analysis was used to characterize three isolates. Results: All the isolates were susceptible only to polymyxins. blaOXA-23-like gene was the only acquired carbapenemase gene in 88.2% of the isolates. Multilocus sequence typing identified various sequence types: ST2, ST19, ST195, ST577 and ST632. Two new sequence types, namely, ST1279 and ST1280, were detected by whole-genome sequencing. Conclusion: This study showed that carbapenem-resistant A. baumannii isolates causing infections in intensive care units almost exclusively produce OXA-23, underlining their frequent spread in Italy.

Keywords: OXA-23; PCR; WGS; carbapenem resistance; clonal lineages; virulence.

MeSH terms

  • Acinetobacter Infections / epidemiology*
  • Acinetobacter Infections / microbiology
  • Acinetobacter baumannii / drug effects*
  • Acinetobacter baumannii / genetics*
  • Acinetobacter baumannii / isolation & purification
  • Anti-Bacterial Agents / pharmacology*
  • Bacterial Typing Techniques
  • Carbapenems / pharmacology
  • DNA, Bacterial / genetics
  • Drug Resistance, Multiple, Bacterial*
  • Genome, Bacterial
  • Genomics
  • Humans
  • Intensive Care Units*
  • Italy / epidemiology
  • Microbial Sensitivity Tests
  • Multilocus Sequence Typing
  • Retrospective Studies
  • Whole Genome Sequencing
  • beta-Lactamases / genetics

Substances

  • Anti-Bacterial Agents
  • Carbapenems
  • DNA, Bacterial
  • beta-lactamase OXA-23
  • beta-Lactamases