High-throughput screening identified miR-7-2-3p and miR-29c-3p as metastasis suppressors in gallbladder carcinoma

J Gastroenterol. 2020 Jan;55(1):51-66. doi: 10.1007/s00535-019-01627-0. Epub 2019 Sep 27.

Abstract

Background: Gallbladder carcinoma (GBC) is one of the most aggressive and lethal tumors, with extremely high metastatic activity and poor prognosis. Previously we have studied miRNAs that promote metastasis and progression of GBC, the aim of present study was to systematically elucidate the metastasis suppressor miRNAs in GBC.

Methods: A novel designed high-throughput screening method that combined high content screening (HCS) and miRNA microarray analysis was conducted to filter out anti-metastatic miRNAs of GBC. Frozen samples were analyzed for the expression of goal miRNAs by real-time PCR. The biological functions of miRNAs were studied by transwell, immunoblot. Liver metastasis model via spleen injection was further examined in nude mice. Kaplan-Meier and Cox regression analyses were used to analyze the effect of goal miRNAs on overall survival. The target genes and interaction network of goal miRNAs were determined by whole transcriptome genome sequencing.

Results: Out of the miRNAs library, a series of prominent metastatic suppressor miRNA candidates were filtered out. Among them, miR-7-2-3p and miR-29c-3p were discovered downregulated in GBC, and upregulation of them could reverse epithelial-mesenchymal transition and decrease the metastasis ability of GBC cells in vitro and in vivo, which was dominated by the miRNA-mRNA-lncRNA co-expression network. And DCLK1 and SLC36A1 are the direct target genes of miR-7-2-3p and miR-29c-3p. Moreover, the deficiency of miR-7-2-3p and miR-29c-3p was closely associated with poor prognosis of GBC patients.

Conclusions: Our findings indicate that miR-7-2-3p and miR-29c-3p play crucial roles in the pathogenesis and worse prognosis of GBCs, which may serve as prognosis biomarkers and promise potential therapeutic targets in the future.

Keywords: Gallbladder carcinoma; High-throughput screening; Metastasis suppressor; miR-29c-3p; miR-7-2-3p.

MeSH terms

  • Adult
  • Aged
  • Aged, 80 and over
  • Animals
  • Biomarkers, Tumor / genetics
  • Biomarkers, Tumor / metabolism*
  • Blotting, Western
  • Cell Line, Tumor
  • Down-Regulation
  • Exome Sequencing
  • Female
  • Follow-Up Studies
  • Gallbladder Neoplasms / diagnosis
  • Gallbladder Neoplasms / genetics*
  • Gallbladder Neoplasms / mortality
  • Gallbladder Neoplasms / pathology*
  • High-Throughput Screening Assays
  • Humans
  • Immunoblotting
  • Male
  • Mice
  • Mice, Nude
  • MicroRNAs / metabolism*
  • Middle Aged
  • Neoplasm Metastasis
  • Oligonucleotide Array Sequence Analysis
  • Prognosis
  • Real-Time Polymerase Chain Reaction
  • Retrospective Studies
  • Survival Analysis
  • Up-Regulation

Substances

  • Biomarkers, Tumor
  • MIRN29 microRNA, mouse
  • MIRN29a microRNA, human
  • MIRN7 microRNA, human
  • MIRN7 microRNA, mouse
  • MicroRNAs