Ensemble docking-based virtual screening toward identifying inhibitors against Wee1 kinase

Future Med Chem. 2019 Aug;11(15):1889-1906. doi: 10.4155/fmc-2019-0022.

Abstract

Aim:Wee1 kinase plays a key role in the arrest of G2/M checkpoint that prevents mitotic entry in response to DNA damage. This work is to discover potent Wee1 inhibitors which can be considered valuable. Materials & Methods: Herein, Ensemble docking using multiple crystal structures was considered an effective strategy in the virtual screening. The performance of 17 scoring functions obtained from different docking software was evaluated for molecular docking. Results: Two novel compounds B1 and A2 were identified as Wee1 inhibitors with IC50 values of 10.23 ± 0.505 and 8.72 ± 0.323 μM, respectively. Further cell viability assay demonstrated that the two active compounds exhibited good anticancer activities. Conclusion: This provides a meaningful starting point for further structure optimization to discover more potent Wee1 inhibitors.

Keywords: Wee1 inhibitors; bioassay; ensemble docking; scoring function; virtual screening.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Apoptosis / drug effects
  • Area Under Curve
  • Binding Sites
  • Cell Cycle Proteins / antagonists & inhibitors*
  • Cell Cycle Proteins / classification
  • Cell Cycle Proteins / metabolism
  • Cell Line, Tumor
  • Databases, Protein
  • G2 Phase Cell Cycle Checkpoints / drug effects
  • Humans
  • Molecular Docking Simulation*
  • Phylogeny
  • Protein Binding
  • Protein Kinase Inhibitors / chemistry*
  • Protein Kinase Inhibitors / metabolism
  • Protein Kinase Inhibitors / pharmacology
  • Protein Structure, Tertiary
  • Protein-Tyrosine Kinases / antagonists & inhibitors*
  • Protein-Tyrosine Kinases / classification
  • Protein-Tyrosine Kinases / metabolism
  • Pyrazoles / chemistry
  • Pyrazoles / metabolism
  • Pyrazoles / pharmacology
  • Pyrimidinones / chemistry
  • Pyrimidinones / metabolism
  • Pyrimidinones / pharmacology
  • ROC Curve

Substances

  • Cell Cycle Proteins
  • Protein Kinase Inhibitors
  • Pyrazoles
  • Pyrimidinones
  • Protein-Tyrosine Kinases
  • WEE1 protein, human
  • adavosertib