Rapid and easy method for in vitro determination of transcription factor binding core motifs

Biosci Biotechnol Biochem. 2019 Dec;83(12):2276-2279. doi: 10.1080/09168451.2019.1659719. Epub 2019 Aug 30.

Abstract

We introduce a rapid method for easily elucidating transcription factor (TF) cis-elements by adopting a highly efficient in vitro protein synthesis method and identifying protein-DNA interactions using PCR. We determined two cis-elements for plant TFs using this method, and the results confirmed our method as an easy and time-saving alternative for elucidating TF cis-elements using common laboratory procedures.

Keywords: Transcription factor; cis-element; in vitro transcription/translation; random sequence oligo.

MeSH terms

  • Binding Sites
  • Plant Proteins / metabolism
  • Transcription Factors / metabolism*

Substances

  • Plant Proteins
  • Transcription Factors