Genomic Common Data Model for Biomedical Data in Clinical Practice

Stud Health Technol Inform. 2019 Aug 21:264:1843-1844. doi: 10.3233/SHTI190676.

Abstract

A common data model for clinical NGS panel data that is used in a distributed research network to achieve large scale to make evidence for improving patient care should be developed. This study developed OMOP-CDM extension for NGS panel data and confirmed the feasibility of the model by finding the differences between a database generated by research-purpose and clinical practice. We believe this data model can be used in distributed research model and will facilitate the usage of the clinical NGS data in patient care.

Keywords: Data Analysis; High-Throughput Nucleotide Sequencing; Observational Study.

MeSH terms

  • Databases, Factual*
  • Genomics*
  • Humans
  • Models, Theoretical*