Phase separation and clustering of an ABC transporter in Mycobacterium tuberculosis

Proc Natl Acad Sci U S A. 2019 Aug 13;116(33):16326-16331. doi: 10.1073/pnas.1820683116. Epub 2019 Jul 31.

Abstract

Phase separation drives numerous cellular processes, ranging from the formation of membrane-less organelles to the cooperative assembly of signaling proteins. Features such as multivalency and intrinsic disorder that enable condensate formation are found not only in cytosolic and nuclear proteins, but also in membrane-associated proteins. The ABC transporter Rv1747, which is important for Mycobacterium tuberculosis (Mtb) growth in infected hosts, has a cytoplasmic regulatory module consisting of 2 phosphothreonine-binding Forkhead-associated domains joined by an intrinsically disordered linker with multiple phospho-acceptor threonines. Here we demonstrate that the regulatory modules of Rv1747 and its homolog in Mycobacterium smegmatis form liquid-like condensates as a function of concentration and phosphorylation. The serine/threonine kinases and sole phosphatase of Mtb tune phosphorylation-enhanced phase separation and differentially colocalize with the resulting condensates. The Rv1747 regulatory module also phase-separates on supported lipid bilayers and forms dynamic foci when expressed heterologously in live yeast and M. smegmatis cells. Consistent with these observations, single-molecule localization microscopy reveals that the endogenous Mtb transporter forms higher-order clusters within the Mycobacterium membrane. Collectively, these data suggest a key role for phase separation in the function of these mycobacterial ABC transporters and their regulation via intracellular signaling.

Keywords: ABC transporter; FHA domain; nanoclustering; phase separation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • ATP-Binding Cassette Transporters / chemistry
  • ATP-Binding Cassette Transporters / genetics*
  • Cytosol / metabolism
  • Gene Expression Regulation, Bacterial / genetics
  • Humans
  • Lipid Bilayers / metabolism
  • Membrane Proteins / genetics*
  • Membrane Proteins / ultrastructure
  • Mycobacterium smegmatis / genetics
  • Mycobacterium smegmatis / pathogenicity
  • Mycobacterium tuberculosis / genetics*
  • Mycobacterium tuberculosis / pathogenicity
  • Mycobacterium tuberculosis / ultrastructure
  • Nuclear Proteins / genetics
  • Phosphorylation / genetics
  • Signal Transduction / genetics
  • Single Molecule Imaging
  • Tuberculosis / genetics*
  • Tuberculosis / microbiology

Substances

  • ATP-Binding Cassette Transporters
  • Lipid Bilayers
  • Membrane Proteins
  • Nuclear Proteins
  • Rv1747 protein, Mycobacterium tuberculosis