Discriminant analysis followed by unsupervised cluster analysis including exosomal cystatins predict presence of chronic rhinosinusitis, phenotype, and disease severity

Int Forum Allergy Rhinol. 2019 Sep;9(9):1069-1076. doi: 10.1002/alr.22380. Epub 2019 Jul 19.

Abstract

Background: Cystatins are epithelial protease inhibitors that participate in sinonasal immunity and inflammation. Nasal mucus-derived exosomes (NMDEs) are small vesicles secreted by epithelial cells that carry protein cargo reflective of their host cell. NMDEs have been used as a noninvasive biomarker source to study chronic rhinosinusitis with nasal polyps (CRSwNP) proteomics with superior sensitivity to whole mucus. The purpose of this study was to noninvasively quantify exosomal cystatins in a heterogenous population to determine their utility in predicting phenotype and disease severity.

Methods: This was an Institutional Review Board-approved study in which NMDEs were purified from 105 patients undergoing sinonasal surgery by ultracentrifugation. Demographic and clinical variables were collected and phenotypes were assigned a priori. Linear discriminant analysis was executed based on normalized Cystatin values as phenotype predictor variables. Unsupervised cluster analysis was performed using Ward's linkage followed by Duda/Hart Je(2)/Je(1) index cluster stopping rules. Analysis of variance (ANOVA), Welch's test, and Fisher's exact tests were used for continuous and categorical variables.

Results: NMDE Cystatin-2 expression segregated by phenotype (mean ± standard error [SEM]): control (23.4 ± 4.2 pg/µg, n = 32); CRS without NP (CRSsNP) (56.6 ± 8.3 pg/µg, n = 33); and CRSwNP (130.5 ± 16.7 pg/µg, n = 40) (p < 0.0001). Seven clusters were identified among patients where the highest NMDE Cystatin-2 levels clustered with asthma, tissue eosinophilia, and aspirin-exacerbated respiratory disease (AERD).

Conclusion: Cystatin levels in NMDEs predict CRS phenotype and disease severity. As a "liquid biopsy," noninvasive NMDE collection offers a promising opportunity to study disease pathophysiology, discriminate disease states, and potentially reveal novel therapeutic targets.

Keywords: chronic rhinosinusitis; cluster analysis; exosome; nasal polyps; sinonasal mucus.

MeSH terms

  • Adult
  • Aged
  • Chronic Disease
  • Cluster Analysis
  • Discriminant Analysis
  • Disease Progression
  • Exosomes / metabolism*
  • Female
  • Humans
  • Male
  • Middle Aged
  • Mucus / metabolism*
  • Nose / physiology*
  • Phenotype
  • Predictive Value of Tests
  • Prognosis
  • Rhinitis / diagnosis*
  • Salivary Cystatins / metabolism*
  • Severity of Illness Index
  • Sinusitis / diagnosis*

Substances

  • CST2 protein, human
  • Salivary Cystatins