Coenzyme Binding Site Analysis of an Isopropanol Dehydrogenase with Wide Substrate Spectrum and Excellent Organic Solvent Tolerance

Appl Biochem Biotechnol. 2020 Jan;190(1):18-29. doi: 10.1007/s12010-019-03091-1. Epub 2019 Jul 12.

Abstract

NAD(P)H-dependent enzymes are ideal biocatalysts for the industrial production of chiral compounds, such as chiral alcohols, chiral amino acids, and chiral amines; however, efficient strategies for the regeneration of coenzyme are expected as costly of the coenzymes. Herein, a solvent-tolerant isopropanol dehydrogenase (IDH) showing lower similarity (37%) with other proteins was obtained and characterized. The enzyme exhibits high catalysis ability of its substrates methanol, ethanol, ethylene glycol, glycerol, isopropanol, n-butanol, isobutanol, and acetone. And it has good adaptability in organic solvents (isopropanol, acetonitrile, acetone, and acetophenone). Interaction force and the corresponding amino acid residues between IDH and NAD+ or NADP+ were parsed by docking. The wide substrate spectrum, excellent organic solvent tolerance, and good biocatalytic activity make the excavated enzyme a promising biocatalyst for the production of chiral compounds industrially and the construction of coenzyme regeneration systems in aqueous organic phase or organic phase.

Keywords: Coenzyme regeneration; Docking; NAD(P)+-dependent dehydrogenase; Organic solvent-tolerant; n-Butanol.

MeSH terms

  • Alcohol Oxidoreductases / genetics
  • Alcohol Oxidoreductases / metabolism*
  • Binding Sites
  • Cloning, Molecular
  • Coenzymes / metabolism*
  • Kinetics
  • Molecular Docking Simulation
  • NAD / metabolism
  • NADP / metabolism
  • Organic Chemicals / metabolism
  • Solvents / metabolism*
  • Substrate Specificity

Substances

  • Coenzymes
  • Organic Chemicals
  • Solvents
  • NAD
  • NADP
  • Alcohol Oxidoreductases
  • isopropanol dehydrogenase (NADP)