Structural basis for the recognition of nectin-like protein-5 by the human-activating immune receptor, DNAM-1

J Biol Chem. 2019 Aug 16;294(33):12534-12546. doi: 10.1074/jbc.RA119.009261. Epub 2019 Jun 28.

Abstract

Nectin and nectin-like (Necl) adhesion molecules are broadly overexpressed in a wide range of cancers. By binding to these adhesion molecules, the immunoreceptors DNAX accessory molecule-1 (DNAM-1), CD96 molecule (CD96), and T-cell immunoreceptor with Ig and ITIM domains (TIGIT) play a crucial role in regulating the anticancer activities of immune effector cells. However, within this axis, it remains unclear how DNAM-1 recognizes its cognate ligands. Here, we determined the structure of human DNAM-1 in complex with nectin-like protein-5 (Necl-5) at 2.8 Å resolution. Unexpectedly, we found that the two extracellular domains (D1-D2) of DNAM-1 adopt an unconventional "collapsed" arrangement that is markedly distinct from those in other immunoglobulin-based immunoreceptors. The DNAM-1/Necl-5 interaction was underpinned by conserved lock-and-key motifs located within their respective D1 domains, but also included a distinct interface derived from DNAM-1 D2. Mutation of the signature DNAM-1 "key" motif within the D1 domain attenuated Necl-5 binding and natural killer cell-mediated cytotoxicity. Altogether, our results have implications for understanding the binding mode of an immune receptor family that is emerging as a viable candidate for cancer immunotherapy.

Keywords: CD226 molecule; DNAX accessory molecule-1 (DNAM-1); PVR cell adhesion molecule; cancer immunotherapy; cell adhesion; immunoglobulin fold; immunology; natural killer cells (NK cells); nectin-like protein-5 (NECL-5); protein structure.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs
  • Antigens, Differentiation, T-Lymphocyte* / chemistry
  • Antigens, Differentiation, T-Lymphocyte* / genetics
  • Antigens, Differentiation, T-Lymphocyte* / immunology
  • Antigens, Differentiation, T-Lymphocyte* / metabolism
  • HEK293 Cells
  • Humans
  • Immunity, Cellular*
  • K562 Cells
  • Killer Cells, Natural* / cytology
  • Killer Cells, Natural* / immunology
  • Killer Cells, Natural* / metabolism
  • Mutation
  • Protein Binding
  • Protein Domains
  • Receptors, Virus* / chemistry
  • Receptors, Virus* / genetics
  • Receptors, Virus* / immunology
  • Receptors, Virus* / metabolism

Substances

  • Antigens, Differentiation, T-Lymphocyte
  • CD226 antigen
  • Receptors, Virus
  • poliovirus receptor

Associated data

  • PDB/6O3O
  • PDB/3BP5
  • PDB/4NO0
  • PDB/1P6F
  • PDB/3VH8
  • PDB/1FCG
  • PDB/4FQP
  • PDB/5V52