Successful treatment and digestive decolonisation of a patient with osteitis caused by a carbapenemase-producing Klebsiella pneumoniae isolate harbouring both NDM-1 and OXA-48 enzymes

J Glob Antimicrob Resist. 2019 Sep:18:225-229. doi: 10.1016/j.jgar.2019.06.001. Epub 2019 Jun 12.

Abstract

Objectives: Carbapenem resistance in Klebsiella pneumoniae is an increasing problem worldwide and infections caused by this bacterium can be difficult to treat. This study reported the case of a patient from Romania, who was hospitalised in Bulgaria after an accident trauma. He then came to France for treatment of an osteitis caused by a Klebsiella pneumoniae carrying both blaNDM-1 and blaOXA-48.

Method: The resistome of this extremely drug-resistant bacterium was analysed both with phenotypic (large antibiotic susceptibility testing) and genomic methods (genome sequencing). The genetic environment of the two carbapenemases was studied.

Results: Klebsiella pneumoniae ST307 carrying both a blaNDM-1 and blaOXA-48 gene was located on two different plasmids: Inc L/M and IncFII. The patient was successfully treated by a combination of intravenous colistin (9 MUI, then 4.5 MUI bd), intravenous fosfomycin (4g tds) and oral doxycycline (100mg bd) for 3 months. Faecal microbiota transplantation was successfully conducted for stool carriage.

Conclusion: The ST307 type is becoming endemic in hospital environments and is frequently associated with carbapenem resistance. Treatment of infection caused by multidrug-resistant bacteria is a clinical challenge, and the use of old antibiotics associated with screening and decolonisation of the reservoirs can be an efficient therapeutic alternative.

Keywords: Carbapenem-resistant Enterobacteriaceae; Klebsiella pneumoniae; New Delhi metallo-β-lactamase (NDM-1); OXA-48; Osteitis.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Anti-Bacterial Agents / pharmacology
  • Anti-Bacterial Agents / therapeutic use
  • Bacterial Proteins / adverse effects
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Carbapenems / therapeutic use
  • Drug Resistance, Multiple, Bacterial / drug effects
  • Drug Resistance, Multiple, Bacterial / genetics
  • Fecal Microbiota Transplantation / methods
  • Humans
  • Klebsiella pneumoniae / enzymology
  • Klebsiella pneumoniae / genetics*
  • Klebsiella pneumoniae / metabolism*
  • Klebsiella pneumoniae / pathogenicity
  • Male
  • Microbial Sensitivity Tests
  • Osteitis / chemically induced
  • Osteitis / microbiology*
  • Osteitis / therapy*
  • Plasmids / genetics
  • Whole Genome Sequencing
  • beta-Lactamases / adverse effects
  • beta-Lactamases / genetics*
  • beta-Lactamases / metabolism*

Substances

  • Anti-Bacterial Agents
  • Bacterial Proteins
  • Carbapenems
  • beta-Lactamases
  • beta-lactamase NDM-1
  • carbapenemase
  • oxacillinase