VOLPES: an interactive web-based tool for visualizing and comparing physicochemical properties of biological sequences

Nucleic Acids Res. 2019 Jul 2;47(W1):W632-W635. doi: 10.1093/nar/gkz407.

Abstract

The structure, dynamics and, ultimately, biological function of proteins and nucleic acids are determined by the physicochemical properties of their primary sequences. Such properties are frequently captured via one-dimensional profile plots depicting a given physicochemical variable as a function of sequence position. Hydrophobicity, charge or structural disorder in proteins or nucleobase-density in nucleic acids are routinely visualized in this manner to analyze sequences at a glance. Such visualizations, however, are typically created case-by-case in a purely static manner, employ fixed visualization parameters only and do not enable a quantitative comparison between different sequences. Here, we present VOLPES (volpes.univie.ac.at), a user-friendly web server and the corresponding JavaScript library that enable a fully interactive, multifunctional visualization, analysis and comparison of the physicochemical properties of protein and nucleic-acid sequences, allowing unprecedented insight into biological sequence data and creating a starting point for further in-depth exploration.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computer Graphics
  • Internet
  • Proteins / chemistry
  • RNA / chemistry
  • Sequence Analysis, Protein / methods*
  • Sequence Analysis, RNA / methods*
  • Software*
  • User-Computer Interface

Substances

  • Proteins
  • RNA