Circular RNA expression profile of knee condyle in osteoarthritis by illumina HiSeq platform

J Cell Biochem. 2019 Oct;120(10):17500-17511. doi: 10.1002/jcb.29014. Epub 2019 May 20.

Abstract

Osteoarthritis (OA) is the utmost commonly arising joint disease. Knee condyles play an essential role during OA progression. Circular RNA (or circRNA) is a novel kind of RNA, which, unlike the well-known linear RNA, plays an important regulatory role in OA on the basis of a previous research. In our study, expression of circRNAs in OA knee condyle was measured by illumine sequencing platform. A total of 197 differentially expressed circRNAs, such as hg38_circ_0007474 and hg38_circ_0000118 were identified, and 21 target miRNAs, 2466 source genes and 166 394 circRNA-miRNA-mRNA pairs were predicted. Further analysis was applied on three OA-related circRNAs (hsa_circ_0045714, hsa_circ_0002485, and hsa_circ_0005567). The results were partly verified by previous studies. Further biological research is needed to unfold the possible pathway and therapeutic target of OA.

Keywords: ceRNA network; circRNAs; condyle; gene regulation; osteoarthritis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bone and Bones / metabolism
  • Bone and Bones / pathology
  • Gene Expression Regulation / genetics*
  • Humans
  • Knee / pathology
  • MicroRNAs / genetics*
  • Oligonucleotide Array Sequence Analysis
  • Osteoarthritis / genetics*
  • Osteoarthritis / pathology
  • RNA, Circular / classification
  • RNA, Circular / genetics*
  • RNA, Circular / isolation & purification

Substances

  • MicroRNAs
  • RNA, Circular