Automatic classification of focal liver lesions based on MRI and risk factors

PLoS One. 2019 May 16;14(5):e0217053. doi: 10.1371/journal.pone.0217053. eCollection 2019.

Abstract

Objectives: Accurate classification of focal liver lesions is an important part of liver disease diagnostics. In clinical practice, the lesion type is often determined from the abdominal MR examination, which includes T2-weighted and dynamic contrast enhanced (DCE) MR images. To date, only T2-weighted images are exploited for automatic classification of focal liver lesions. In this study additional MR sequences and risk factors are used for automatic classification to improve the results and to make a step forward to a clinically useful aid for radiologists.

Materials and methods: Clinical MRI data sets of 95 patients with in total 125 benign lesions (40 adenomas, 29 cysts and 56 hemangiomas) and 88 malignant lesions (30 hepatocellular carcinomas (HCC) and 58 metastases) were included in this study. Contrast curve, gray level histogram, and gray level co-occurrence matrix texture features were extracted from the DCE-MR and T2-weighted images. In addition, risk factors including the presence of steatosis, cirrhosis, and a known primary tumor were used as features. Fifty features with the highest ANOVA F-score were selected and fed to an extremely randomized trees classifier. The classifier evaluation was performed using the leave-one-out principle and receiver operating characteristic (ROC) curve analysis.

Results: The overall accuracy for the classification of the five major focal liver lesion types is 0.77. The sensitivity/specificity is 0.80/0.78, 0.93/0.93, 0.84/0.82, 0.73/0.56, and 0.62/0.77 for adenoma, cyst, hemangioma, HCC, and metastasis, respectively.

Conclusion: The proposed classification system using features derived from clinical DCE-MR and T2-weighted images, with additional risk factors is able to differentiate five common types of lesions and is a step forward to a clinically useful aid for focal liver lesion diagnosis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenoma / diagnostic imaging
  • Algorithms
  • Area Under Curve
  • Automation
  • Carcinoma, Hepatocellular / diagnostic imaging*
  • Cysts / diagnostic imaging
  • Diagnosis, Computer-Assisted / methods*
  • False Positive Reactions
  • Hemangioma / diagnostic imaging
  • Humans
  • Liver / diagnostic imaging*
  • Liver Neoplasms / diagnostic imaging*
  • Machine Learning
  • Magnetic Resonance Imaging / methods*
  • Pattern Recognition, Automated*
  • ROC Curve
  • Radiology / methods
  • Reproducibility of Results
  • Risk Factors
  • Sensitivity and Specificity

Grants and funding

This work was financially supported by the project BENEFIT (Better Effectiveness aNd Efficiency by measuring and modelling of Interventional Therapy) in the framework of the EU research programme ITEA (Information Technology for European Advancement). The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.