Independent Host Factors and Bacterial Genetic Determinants of the Emergence and Dominance of Escherichia coli Sequence Type 131 CTX-M-27 in a Community Pediatric Cohort Study

Antimicrob Agents Chemother. 2019 Jun 24;63(7):e00382-19. doi: 10.1128/AAC.00382-19. Print 2019 Jul.

Abstract

The recent emergence and diffusion in the community of Escherichia coli isolates belonging to the multidrug-resistant and CTX-M-27-producing sequence type 131 (ST131) C1-M27 cluster makes this cluster potentially as epidemic as the worldwide E. coli ST131 subclade C2 composed of multidrug-resistant isolates producing CTX-M-15. Thirty-five extended-spectrum beta-lactamase (ESBL)-producing ST131 isolates were identified in a cohort of 1,885 French children over a 5-year period. They were sequenced to characterize the ST131 E. coli isolates producing CTX-M-27 recently emerging in France. ST131 isolates producing CTX-M-27 (n = 17), and particularly those belonging to the C1-M27 cluster (n = 14), carried many resistance-encoding genes and predominantly an F1:A2:B20 plasmid type. In multivariate analysis, having been hospitalized since birth (odds ratio [OR], 10.9; 95% confidence interval [CI], 2.4 to 48.8; P = 0.002) and being cared for in a day care center (OR, 9.4; 95% CI, 1.5 to 59.0; P = 0.017) were independent risk factors for ST131 CTX-M-27 fecal carriage compared with ESBL-producing non-ST131 isolates. No independent risk factor was found when comparing CTX-M-15 (n = 11)- and CTX-M-1/14 (n = 7)-producing ST131 isolates with ESBL-producing non-ST131 isolates or with non-ESBL-producing isolates. Several factors may contribute to the increase in fecal carriage of CTX-M-27-producing E. coli isolates, namely, resistance to multiple antibiotics, capacity of the CTX-M-27 enzyme to hydrolyze both cefotaxime and ceftazidime, carriage of a peculiar F-type plasmid, and/or capacity to colonize children who have been hospitalized since birth or who attend day care centers.

Keywords: C1-M27; CTX-M-27; E. coli; ESBL; ST131; children; fecal carriage; risk factors.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adhesins, Escherichia coli / genetics
  • Bacteriocins / genetics
  • Child, Preschool
  • Cohort Studies
  • Drug Resistance, Bacterial / genetics
  • Escherichia coli / drug effects
  • Escherichia coli / genetics*
  • Escherichia coli / isolation & purification
  • Escherichia coli Infections / microbiology*
  • Escherichia coli Proteins / genetics*
  • Feces / microbiology
  • Fimbriae Proteins / genetics
  • France
  • Host-Pathogen Interactions / genetics
  • Humans
  • Infant
  • Life Style
  • Phylogeny
  • Plasmids / genetics
  • Virulence Factors / genetics
  • Whole Genome Sequencing
  • beta-Lactamases / genetics*

Substances

  • Adhesins, Escherichia coli
  • Bacteriocins
  • Escherichia coli Proteins
  • Virulence Factors
  • fimH protein, E coli
  • Fimbriae Proteins
  • CTX-M-27, E coli
  • beta-Lactamases