Co-expression of Cas9 and single-guided RNAs in Escherichia coli streamlines production of Cas9 ribonucleoproteins

Commun Biol. 2019 May 3:2:161. doi: 10.1038/s42003-019-0402-x. eCollection 2019.

Abstract

CRISPR/Cas9 ribonucleoprotein (RNP) complexes are promising biological tools with diverse biomedical applications. However, to date there are no efficient methods that can produce these proteins at large scales and low cost. Here, we present a streamlined method for direct production of Cas9 RNPs from Escherichia coli by co-expression of Cas9 and the target-specific single-guided RNAs. Harnessing an ultrahigh-affinity CL7/Im7 purification system recently developed we achieve one-step purification of the self-assembling CRISPR/Cas RNPs, including the commonly used Cas9 and Cas12a, within half a day and with a ~fourfold higher yield than incumbent methods. The prepared Cas RNPs show remarkable stability in the absence of RNase inhibitors, as well as profound gene-editing efficiency in vitro and in vivo. Our method is convenient, cost-effective, and can be used to prepare other CRISPR/Cas RNPs.

Keywords: Biological techniques; Biotechnology; CRISPR-Cas9 genome editing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Base Sequence
  • CRISPR-Associated Protein 9 / genetics*
  • CRISPR-Associated Protein 9 / metabolism
  • CRISPR-Associated Proteins / genetics
  • CRISPR-Associated Proteins / metabolism
  • CRISPR-Cas Systems*
  • Chromatography, Affinity / methods
  • Clustered Regularly Interspaced Short Palindromic Repeats
  • Colicins / genetics
  • Colicins / metabolism
  • Endodeoxyribonucleases / genetics
  • Endodeoxyribonucleases / metabolism
  • Escherichia coli / genetics*
  • Escherichia coli / metabolism
  • Gene Editing / methods*
  • Gene Expression
  • Plasmids / chemistry
  • Plasmids / metabolism
  • RNA, Guide, CRISPR-Cas Systems / genetics*
  • RNA, Guide, CRISPR-Cas Systems / metabolism
  • Ribonucleoproteins / biosynthesis
  • Ribonucleoproteins / genetics*
  • Ribonucleoproteins / isolation & purification

Substances

  • Bacterial Proteins
  • CRISPR-Associated Proteins
  • ColE7 protein, E coli
  • Colicins
  • RNA, Guide, CRISPR-Cas Systems
  • Ribonucleoproteins
  • CRISPR-Associated Protein 9
  • Cas12a protein
  • Endodeoxyribonucleases