LRRC59 modulates type I interferon signaling by restraining the SQSTM1/p62-mediated autophagic degradation of pattern recognition receptor DDX58/RIG-I

Autophagy. 2020 Mar;16(3):408-418. doi: 10.1080/15548627.2019.1615303. Epub 2019 May 22.

Abstract

DDX58/RIG-I, is a critical pattern recognition receptor for viral RNA, which plays an essential role in antiviral immunity. Its posttranslational modifications and stability are tightly regulated to mediate the moderate production of type I IFN to maintain the immune homeostasis. Recently, we reported that macroautophagy/autophagy balances type I IFN signaling through selective degradation of ISG15-associated DDX58 via LRRC25. However, the regulatory mechanism about the autophagic degradation of DDX58 remains largely undefined. Here, we identified LRRC59 as a vital positive regulator of DDX58-mediated type I IFN signaling. Upon virus infection, LRRC59 specifically interacted with ISG15-associated DDX58 and blocked its association with LRRC25, the secondary receptor to deliver DDX58 to autophagosomes for SQSTM1/p62-dependent degradation, leading to the stronger antiviral immune responses. Thus, our study reveals a novel regulatory role of selective autophagy in innate antiviral responses mediated by the cross-regulation of LRRC family members. These data further provide insights into the crosstalk between autophagy and innate immune responses.Abbreviations: ATG: Autophagy-related; Baf A1: Bafilomycin A1; DDX58/RIG-I: DEAD [Asp-Glu-Ala-Asp] box polypeptide 58; EV: Empty vector; IC poly[I:C]: Intracellular polyriboinosinic polyribocytidylic acid; IFIH1/MDA5: Interferon induced with helicase C domain 1; IFN: Interferon; ISG15: ISG15 ubiquitin like modifier; IKBKE: Inhibitor of nuclear factor kappa B kinase subunit epsilon; IRF3: Interferon regulatory factor 3; KO: Knockout; LRRC: Leucine rich repeat containing; MAVS: Mitochondrial antiviral signaling protein; CGAS/MB21D1: Cyclic GMP-AMP synthase; SeV: Sendai virus; siRNA: small interfering RNA; SQSTM1/p62: Sequestosome 1; TBK1: TANK binding kinase 1; TLR: Toll like receptor; TMEM173/STING: Transmembrane protein 173; VSV: Vesicular stomatitis virus; WT: Wild type.

Keywords: Autophagic degradation; DDX58/RIG-I; LRRC59; cargo receptor; type I interferon.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antiviral Agents / metabolism
  • Autophagy*
  • Cell Line
  • Cytokines / metabolism
  • DEAD Box Protein 58 / chemistry
  • DEAD Box Protein 58 / metabolism*
  • Humans
  • Interferon Type I / metabolism*
  • Membrane Proteins / metabolism*
  • Models, Biological
  • Protein Binding
  • Protein Stability
  • Proteolysis*
  • Receptors, Immunologic
  • Sequestosome-1 Protein / metabolism*
  • Signal Transduction*
  • Ubiquitins / metabolism
  • Virus Diseases / metabolism

Substances

  • Antiviral Agents
  • Cytokines
  • Interferon Type I
  • LRRC59 protein, human
  • Membrane Proteins
  • Receptors, Immunologic
  • SQSTM1 protein, human
  • Sequestosome-1 Protein
  • Ubiquitins
  • ISG15 protein, human
  • RIGI protein, human
  • DEAD Box Protein 58

Grants and funding

This work was supported by National Natural Science Foundation of China (31870862, 31700760, 31770978 and 91742109), Science and Technology Planning Project of Guangzhou, China (201804010385), and the Fundamental Research Funds for the Central Universities (18lgpy49).