Metabolomics and Cytokine Analysis for Identification of Severe Drug-Induced Liver Injury

J Proteome Res. 2019 Jun 7;18(6):2514-2524. doi: 10.1021/acs.jproteome.9b00047. Epub 2019 Apr 30.

Abstract

Aim: To evaluate the levels of metabolites and cytokines in the serum of patients with severe and non-severe idiosyncratic drug-induced liver injury (DILI) and to identify biomarkers of DILI severity.

Methods: Gas chromatography-mass spectrometry (GC-MS) and ultraperformance liquid chromatography-mass spectrometry (UPLC-MS) based metabolomic approaches were used to evaluate the metabolome of serum samples from 29 DILI patients of severity grade 3 (non-severe), 27 of severity grade 4 (severe), and 36 healthy control (HC). The levels of total keratin-18 (K18), fragment K18, and 27 cytokines were determined by enzyme-linked immunosorbent assay.

Results: The alkaline phosphatase activity ( p = 0.021) and international normalized ratio (INR) ( p < 0.001) differed significantly between the severe and non-severe groups. The severe group had a higher serum fragment K18 level than the non-severe group. A multivariate analysis showed good separation between all pairs of the HC, non-severe, and severe groups. According to the orthogonal partial least-squares-discriminant analysis (OPLS-DA) model, 14 metabolites were selected by GC-MS and 17 by UPLC-MS. Among these metabolites, the levels of 16 were increased and of 15 were decreased in the severe group. A pathway analysis revealed major changes in the primary bile acid biosynthesis and alpha-linolenic acid metabolic pathways. The levels of PDGF-bb, IP-10, IL-1Rα, MIP-1β, and TNF-α differed significantly between the severe and non-severe groups, and the levels of most of the metabolites were negatively correlated with those of these cytokines. An OPLS-DA model that included the detected metabolites and cytokines revealed clear separation of the severe and non-severe groups.

Conclusion: We identified 31 metabolites and 5 cytokines related to the severity of idiosyncratic DILI. The primary bile acid biosynthesis and alpha-linolenic acid metabolism pathways were also related to the severity of DILI. A model that incorporated the metabolites and cytokines showed clear separation between patients with severe and non-severe DILI, suggesting that these biomarkers have potential as indicators of DILI severity.

Keywords: GC−MS; LC−MS; OPLS-DA; biomarkers; cytokines; drug-induced liver injury; keratin-18; metabolomics; multivariate analysis; severity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Becaplermin / blood
  • Biomarkers / blood*
  • Chemical and Drug Induced Liver Injury / blood*
  • Chemical and Drug Induced Liver Injury / genetics
  • Chemical and Drug Induced Liver Injury / pathology
  • Chemokine CCL4 / blood
  • Chemokine CXCL10 / blood
  • Cytokines / blood*
  • Cytokines / classification
  • Female
  • Gas Chromatography-Mass Spectrometry
  • Humans
  • Interleukin 1 Receptor Antagonist Protein / blood
  • Keratin-18 / blood
  • Male
  • Metabolic Networks and Pathways / genetics
  • Metabolome / genetics*
  • Metabolomics / methods*
  • Middle Aged
  • Tandem Mass Spectrometry
  • Tumor Necrosis Factor-alpha / blood

Substances

  • Biomarkers
  • CXCL10 protein, human
  • Chemokine CCL4
  • Chemokine CXCL10
  • Cytokines
  • Interleukin 1 Receptor Antagonist Protein
  • KRT18 protein, human
  • Keratin-18
  • Tumor Necrosis Factor-alpha
  • Becaplermin