Pelagibacterium lacus sp. nov., isolated from lake water

Int J Syst Evol Microbiol. 2019 Jun;69(6):1807-1813. doi: 10.1099/ijsem.0.003398. Epub 2019 Apr 17.

Abstract

A Gram-stain-negative, strictly aerobic, oxidase- and catalase-positive, non-gliding, motile with a single polar flagellum, and short rod-shaped bacterial strain, designated XYN52T, was isolated from a freshwater lake in the west of China. Phylogenetic analysis of the 16S rRNA gene determined that strain XYN52T was a member of the genus Pelagibacterium within the family Hyphomicrobiaceae. Strain XYN52T was able to grow at 4-37 °C (optimum, 30 °C), pH 6.0-9.0 (pH 7.5) and in the presence of up to 7.0 % w/v NaCl (0.5 %).The major quinone was ubiquinone 10. The major cellular fatty acids were C18 : 1ω6c/C18 : 1ω7c, C19 : 0ω8c cyclo and 11-methyl C18 : 1ω7c. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and three kinds of glycolipids. The genomic DNA G+C content was 64.5 mol%. On the basis of these data, strain XYN52T represents a novel species in the genus Pelagibacterium, for which the name Pelagibacterium lacus sp. nov. is proposed. The type strain is XYN52T (=KCTC 62845T=MCCC 1H00348T).

Keywords: 16S rRNA gene; Pelagibacterium; phylogenetic analysis.

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • China
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Glycolipids / chemistry
  • Hyphomicrobiaceae / classification*
  • Hyphomicrobiaceae / isolation & purification
  • Lakes / microbiology*
  • Phospholipids / chemistry
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Ubiquinone / chemistry

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Glycolipids
  • Phospholipids
  • RNA, Ribosomal, 16S
  • Ubiquinone
  • Ubiquinone Q2