Structural basis of recognition and destabilization of the histone H2B ubiquitinated nucleosome by the DOT1L histone H3 Lys79 methyltransferase

Genes Dev. 2019 Jun 1;33(11-12):620-625. doi: 10.1101/gad.323790.118. Epub 2019 Mar 28.

Abstract

DOT1L is a histone H3 Lys79 methyltransferase whose activity is stimulated by histone H2B Lys120 ubiquitination, suggesting cross-talk between histone H3 methylation and H2B ubiquitination. Here, we present cryo-EM structures of DOT1L complexes with unmodified or H2B ubiquitinated nucleosomes, showing that DOT1L recognizes H2B ubiquitin and the H2A/H2B acidic patch through a C-terminal hydrophobic helix and an arginine anchor in DOT1L, respectively. Furthermore, the structures combined with single-molecule FRET experiments show that H2B ubiquitination enhances a noncatalytic function of the DOT1L-destabilizing nucleosome. These results establish the molecular basis of the cross-talk between H2B ubiquitination and H3 Lys79 methylation as well as nucleosome destabilization by DOT1L.

Keywords: cryo-EM; histone; methylation; nucleosome; ubiquitin.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arginine / metabolism
  • Catalytic Domain
  • Cryoelectron Microscopy
  • Histone-Lysine N-Methyltransferase / chemistry
  • Histone-Lysine N-Methyltransferase / metabolism
  • Histones / chemistry*
  • Histones / metabolism*
  • Humans
  • Hydrophobic and Hydrophilic Interactions
  • Methylation
  • Methyltransferases / chemistry*
  • Methyltransferases / metabolism*
  • Models, Molecular
  • Nucleosomes / chemistry*
  • Nucleosomes / metabolism*
  • Protein Stability
  • Protein Structure, Secondary
  • Ubiquitin / metabolism
  • Ubiquitination

Substances

  • Histones
  • Nucleosomes
  • Ubiquitin
  • Arginine
  • DOT1L protein, human
  • Methyltransferases
  • Histone-Lysine N-Methyltransferase