CRISPR/Cas9-mediated genome editing of splicing mutation causing congenital hearing loss

Gene. 2019 Jun 30:703:83-90. doi: 10.1016/j.gene.2019.03.020. Epub 2019 Mar 18.

Abstract

Clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 system has ushered in a new era of gene therapy. In this study, we aimed to demonstrate precise CRISPR/Cas9-mediated genome editing of the splicing mutation c.919-2A > G in intron 7 of the SLC26A4 gene, which is the second most common causative gene of congenital hearing loss. We designed candidate single-guide RNAs (sgRNAs) aimed to direct the targeting of Staphylococcus aureus Cas9 to either exon 7 or exon 8 of SLC26A4. Several of the designed sgRNAs showed targeting activity, with average indel efficiencies ranging from approximately 14% to 25%. The usage of dual sgRNAs delivered both into Neuro2a cells and primary mouse embryonic fibroblasts resulted in the successful removal of large genomic fragments within the target locus. We subsequently evaluated genome editing in the presence of artificial donor templates to induce precise target modification via homology-directed repair. Using this approach, two different donor plasmids successfully introduced silent mutations within the c.919-2A region of Slc26a4 without evident off-target activities. Overall, these results indicate that CRISPR/Cas9-mediated correction of mutations in the Slc26a4 gene is a feasible therapeutic option for restoration of hearing loss.

Keywords: CRISPR/Cas9; Gene editing; SLC26A4; Splicing mutation.

MeSH terms

  • Animals
  • Bacterial Proteins / metabolism
  • CRISPR-Associated Protein 9 / metabolism*
  • CRISPR-Cas Systems
  • Cell Line
  • Exons
  • Gene Editing
  • Gene Targeting / methods*
  • Genetic Therapy
  • Hearing Loss / congenital*
  • Hearing Loss / genetics
  • Humans
  • Mice
  • Staphylococcus aureus / metabolism*
  • Sulfate Transporters / genetics*

Substances

  • Bacterial Proteins
  • SLC26A4 protein, human
  • Sulfate Transporters
  • CRISPR-Associated Protein 9