Function and regulation of chromatin insulators in dynamic genome organization

Curr Opin Cell Biol. 2019 Jun:58:61-68. doi: 10.1016/j.ceb.2019.02.001. Epub 2019 Mar 12.

Abstract

Chromatin insulators are DNA-protein complexes that play a crucial role in regulating chromatin organization. Within the past two years, a plethora of genome-wide conformation capture studies have helped reveal that insulators are necessary for proper genome-wide organization of topologically associating domains, which are formed in a manner distinct from that of compartments. These studies have also provided novel insights into the mechanics of how CTCF/cohesin-dependent loops form in mammals, strongly supporting the loop extrusion model. In combination with single-cell imaging approaches in both Drosophila and mammals, the dynamics of insulator-mediated chromatin interactions are also coming to light. Insulator-dependent structures vary across individual cells and tissues, highlighting the need to study the regulation of insulators in particular temporal and spatial contexts throughout development.

Publication types

  • Research Support, N.I.H., Intramural
  • Review

MeSH terms

  • Animals
  • CCCTC-Binding Factor / metabolism
  • Cell Cycle Proteins / metabolism
  • Chromatin / chemistry*
  • Chromatin / genetics*
  • Chromatin / metabolism
  • Chromosomal Proteins, Non-Histone / metabolism
  • Cohesins
  • Drosophila / genetics
  • Gene Expression Regulation
  • Humans
  • Insulator Elements*
  • Nervous System / metabolism
  • Repressor Proteins / metabolism
  • Transcription Factors / metabolism

Substances

  • CCCTC-Binding Factor
  • Cell Cycle Proteins
  • Chromatin
  • Chromosomal Proteins, Non-Histone
  • Repressor Proteins
  • Transcription Factors