Hyperspectral tree crown classification using the multiple instance adaptive cosine estimator

PeerJ. 2019 Feb 28:7:e6405. doi: 10.7717/peerj.6405. eCollection 2019.

Abstract

Tree species classification using hyperspectral imagery is a challenging task due to the high spectral similarity between species and large intra-species variability. This paper proposes a solution using the Multiple Instance Adaptive Cosine Estimator (MI-ACE) algorithm. MI-ACE estimates a discriminative target signature to differentiate between a pair of tree species while accounting for label uncertainty. Multi-class species classification is achieved by training a set of one-vs-one MI-ACE classifiers corresponding to the classification between each pair of tree species and a majority voting on the classification results from all classifiers. Additionally, the performance of MI-ACE does not rely on parameter settings that require tuning resulting in a method that is easy to use in application. Results presented are using training and testing data provided by a data analysis competition aimed at encouraging the development of methods for extracting ecological information through remote sensing obtained through participation in the competition. The experimental results using one-vs-one MI-ACE technique composed of a hierarchical classification, where a tree crown is first classified to one of the genus classes and one of the species classes. The species-level rank-1 classification accuracy is 86.4% and cross entropy is 0.9395 on the testing data, provided by the competition organizer, without the release of ground truth for testing data. Similarly, the same evaluation metrics are computed on the training data, where the rank-1 classification accuracy is 95.62% and the cross entropy is 0.2649. The results show that the presented approach can not only classify the majority species classes, but also classify the rare species classes.

Keywords: ACE; Classification; Genus classification; Hyperspectral; Multiple instance; NEON; One-vs-one; Species classification; Tree crown.

Grants and funding

This material is based upon work supported by the National Science Foundation under Grant IIS-1723891-CAREER: Supervised Learning for Incomplete and Uncertain Data. The National Ecological Observatory Network is a program sponsored by the National Science Foundation and operated under cooperative agreement by Battelle Memorial Institute. This material is based in part upon work supported by the National Science Foundation through the NEON Program. The ECODSE competition was supported, in part, by a research grant from NIST IAD Data Science Research Program to D Z Wang, E P White, and S Bohlman, by the Gordon and Betty Moore Foundation’s Data-Driven Discovery Initiative through grant GBMF4563 to E P White, and by an NSF Dimension of Biodiversity program grant (DEB-1442280) to S Bohlman. There was no additional external funding received for this study. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.