An alkaline active feruloyl-CoA synthetase from soil metagenome as a potential key enzyme for lignin valorization strategies

PLoS One. 2019 Feb 25;14(2):e0212629. doi: 10.1371/journal.pone.0212629. eCollection 2019.

Abstract

Ferulic acid (FA), a low-molecular weight aromatic compound derived from lignin, represents a high-value molecule, used for applications in the cosmetic and pharmaceutical industries. FA can be further enzymatically converted in other commercially interesting molecules, such as vanillin and bioplastics. In several organisms, these transformations often start with a common step of FA activation via CoA-thioesterification, catalyzed by feruloyl-CoA synthetases (Fcs). In this context, these enzymes are of biotechnological interest for conversion of lignin-derived FA into high value chemicals. In this study, we describe the first structural characterization of a prokaryotic Fcs, named FCS1, isolated from a lignin-degrading microbial consortium. The FCS1 optimum pH and temperature were 9 and 37°C, respectively, with Km of 0.12 mM and Vmax of 36.82 U/mg. The circular dichroism spectra indicated a notable secondary structure stability at alkaline pH values and high temperatures. This secondary structure stability corroborates the activity data, which remains high until pH 9. The Small Angle X-Ray Scattering analyses resulted on the tertiary/quaternary structure and the low-resolution envelope in solution of FCS1, which was modeled as a homodimer using the hyperthermophilic nucleoside diphosphate-forming acetyl-CoA synthetase from Candidatus Korachaeum cryptofilum. This study contributes to the field of research by establishing the first biophysical and structural characterization for Fcs, and our data may be used for comparison against novel enzymes of this class that to be studied in the future.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Archaea* / enzymology
  • Archaea* / genetics
  • Archaeal Proteins* / chemistry
  • Archaeal Proteins* / genetics
  • Archaeal Proteins* / metabolism
  • Benzaldehydes / chemistry
  • Benzaldehydes / metabolism
  • Coenzyme A Ligases* / chemistry
  • Coenzyme A Ligases* / genetics
  • Coenzyme A Ligases* / metabolism
  • Coumaric Acids / chemistry
  • Coumaric Acids / metabolism
  • Hydrogen-Ion Concentration
  • Lignin / chemistry*
  • Lignin / metabolism
  • Metagenome*
  • Protein Domains
  • Soil
  • Soil Microbiology*

Substances

  • Archaeal Proteins
  • Benzaldehydes
  • Coumaric Acids
  • Soil
  • Lignin
  • ferulic acid
  • vanillin
  • Coenzyme A Ligases
  • feruloyl-coenzyme A synthetase

Grants and funding

This work was financially supported by grants from Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP; 15/50590-4, 15/50612-8, 17/17275-3 and 17/22669-0) and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq; 305748/2017-3, 305740/2017-2 and 304816/2017-5). TAG and JNA were supported by FAPESP fellowship (17/16089-1 and 2017/16976-8 respectively). VS was supported by CAPES/PROEXFellowship and FAPESP fellowships (2018/18101-1 and 2017/05901-7). NV was supported by CAPES and FAPESP fellowship (17/08166-6).