Sinorhodobacter populi sp. nov., isolated from the symptomatic bark tissue of Populus × euramericana canker

Int J Syst Evol Microbiol. 2019 Apr;69(4):1220-1224. doi: 10.1099/ijsem.0.003300. Epub 2019 Feb 20.

Abstract

We isolated five novel bacterial strains from symptomatic bark tissue of Populus × euramericana canker that were Gram-stain-negative, non-motile, aerobic oxidase-negative and catalase-positive. Growth occurred at 10-41 °C and at pH 5.0-7.0, with optimum growth at 30 °C and pH 7.0. Additionally, growth occurred in conditions of 0-5 % (w/v) salinity, but not above 7 % NaCl. The 16S rRNA gene sequences of the novel strains shared the highest similarity with Sinorhodobacter ferrireducens SgZ-3T (97.1 %). The average nucleotide identity values between the novel strains and two type strains (S.inorhodobacter ferrireducens CCTCC AB2012026T and 'Sinorhodobacter hungdaonensis' CGMCC 1.12963T) were 78.4-78.9 %, which were lower than the proposed species boundary cut-off (95-96 %). The main polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, an unidentified lipid and phosphatidylcholine. The main respiratory quinone was Q-10, and major fatty acids were C18 : 1ω7c and/or C18 : 1ω6c. Based on data from a polyphasic taxonomy study, the novel strains represent a novel species of the genus Sinorhodobacter, for which the name Sinorhodobacter populi sp. nov. is proposed. The type strain is sk2b1T (=CFCC 14580T=KCTC 52802T).

Keywords: Sinorhodobacter; average nucleotide identity; new taxon; taxonomy.

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Cardenolides / chemistry
  • China
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Phospholipids / chemistry
  • Phylogeny*
  • Plant Bark / microbiology*
  • Plant Diseases / microbiology*
  • Populus / microbiology*
  • RNA, Ribosomal, 16S / genetics
  • Rhodobacteraceae / classification*
  • Rhodobacteraceae / isolation & purification
  • Sequence Analysis, DNA

Substances

  • Cardenolides
  • DNA, Bacterial
  • Fatty Acids
  • Phospholipids
  • RNA, Ribosomal, 16S
  • UNBS 1450