Impact of NUDT15 genetics on severe thiopurine-related hematotoxicity in patients with European ancestry

Genet Med. 2019 Sep;21(9):2145-2150. doi: 10.1038/s41436-019-0448-7. Epub 2019 Feb 7.

Abstract

Purpose: Severe hematotoxicity in patients with thiopurine therapy has been associated with genetic polymorphisms in the thiopurine S-methyltransferase (TPMT). While TPMT genetic testing is clinically implemented for dose individualization, alterations in the nudix hydrolase 15 (NUDT15) emerged as independent determinant of thiopurine-related hematotoxicity. Because data for European patients are limited, we investigated the relevance of NUDT15 in Europeans.

Methods: Additionally to TPMT phenotyping/genotyping, we performed in-depth Sanger sequencing analyses of NUDT15 coding region in 107 European patients who developed severe thiopurine-related hematotoxicity as extreme phenotype. Moreover, genotyping for NUDT15 variants in 689 acute lymphoblastic leukemia (ALL) patients was performed.

Results: As expected TPMT was the main cause of severe hematotoxicity in 31% of patients, who were either TPMT deficient (10%) or heterozygous carriers of TPMT variants (21%). By comparison, NUDT15 genetic polymorphism was identified in 14 (13%) patients including one novel variant (p.Met1Ile). Six percent of patients with severe toxicity carried variants in both TPMT and NUDT15. Among patients who developed toxicity within 3 months of treatment, 13% were found to be carriers of NUDT15 variants.

Conclusion: Taken together, NUDT15 and TPMT genetics explain ~50% of severe thiopurine-related hematotoxicity, providing a compelling rationale for additional preemptive testing of NUDT15 genetics not only in Asians, but also in Europeans.

Keywords: NUDT15; TPMT; adverse drug reaction; hematotoxicity; pharmacogenetics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Aged
  • Aged, 80 and over
  • Drug Hypersensitivity / etiology
  • Drug Hypersensitivity / genetics*
  • Drug Hypersensitivity / pathology
  • Drug-Related Side Effects and Adverse Reactions / genetics
  • Drug-Related Side Effects and Adverse Reactions / pathology
  • Female
  • Genetic Predisposition to Disease
  • Genetic Testing / methods
  • Humans
  • Male
  • Methyltransferases / genetics*
  • Middle Aged
  • Precursor Cell Lymphoblastic Leukemia-Lymphoma / complications
  • Precursor Cell Lymphoblastic Leukemia-Lymphoma / drug therapy
  • Precursor Cell Lymphoblastic Leukemia-Lymphoma / genetics*
  • Precursor Cell Lymphoblastic Leukemia-Lymphoma / pathology
  • Purine-Pyrimidine Metabolism, Inborn Errors / genetics*
  • Purine-Pyrimidine Metabolism, Inborn Errors / pathology
  • Pyrophosphatases / genetics*

Substances

  • Methyltransferases
  • TPMT protein, human
  • NUDT15 protein, human
  • Pyrophosphatases

Supplementary concepts

  • Thiopurine S methyltranferase deficiency