Systems analysis identifies potential target genes to overcome cetuximab resistance in colorectal cancer cells

FEBS J. 2019 Apr;286(7):1305-1318. doi: 10.1111/febs.14773. Epub 2019 Feb 20.

Abstract

Cetuximab (CTX), a monoclonal antibody against epidermal growth factor receptor, is being widely used for colorectal cancer (CRC) with wild-type (WT) KRAS. However, its responsiveness is still very limited and WT KRAS is not enough to indicate such responsiveness. Here, by analyzing the gene expression data of CRC patients treated with CTX monotherapy, we have identified DUSP4, ETV5, GNB5, NT5E, and PHLDA1 as potential targets to overcome CTX resistance. We found that knockdown of any of these five genes can increase CTX sensitivity in KRAS WT cells. Interestingly, we further found that GNB5 knockdown can increase CTX sensitivity even for KRAS mutant cells. We unraveled that GNB5 overexpression contributes to CTX resistance by modulating the Akt signaling pathway from experiments and mathematical simulation. Overall, these results indicate that GNB5 might be a promising target for combination therapy with CTX irrespective of KRAS mutation.

Keywords: cetuximab; colorectal cancer; drug resistance; mathematical modeling; systems biology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5'-Nucleotidase / genetics
  • Antineoplastic Agents, Immunological / pharmacology*
  • Apoptosis
  • Biomarkers, Tumor / genetics*
  • Cell Proliferation
  • Cetuximab / pharmacology*
  • Colorectal Neoplasms / drug therapy
  • Colorectal Neoplasms / genetics*
  • Colorectal Neoplasms / pathology
  • DNA-Binding Proteins / genetics
  • Drug Resistance, Neoplasm / genetics*
  • Dual-Specificity Phosphatases / genetics
  • GPI-Linked Proteins / genetics
  • GTP-Binding Protein beta Subunits / genetics*
  • Gene Expression Profiling
  • Humans
  • Mitogen-Activated Protein Kinase Phosphatases / genetics
  • Models, Theoretical*
  • Mutation*
  • Signal Transduction
  • Systems Analysis
  • Transcription Factors / genetics

Substances

  • Antineoplastic Agents, Immunological
  • Biomarkers, Tumor
  • DNA-Binding Proteins
  • ETV5 protein, human
  • GNB5 protein, human
  • GPI-Linked Proteins
  • GTP-Binding Protein beta Subunits
  • PHLDA1 protein, human
  • Transcription Factors
  • Mitogen-Activated Protein Kinase Phosphatases
  • DUSP4 protein, human
  • Dual-Specificity Phosphatases
  • 5'-Nucleotidase
  • NT5E protein, human
  • Cetuximab