Specific microbes of saliva and vaginal fluid of Guangdong Han females based on 16S rDNA high-throughput sequencing

Int J Legal Med. 2019 May;133(3):699-710. doi: 10.1007/s00414-018-1986-2. Epub 2019 Jan 4.

Abstract

Vaginal fluid and saliva are of great importance in forensic sciences. The identification of vaginal fluid or saliva is especially important in criminal cases. Microbes are considered as a promising marker for the identification of body fluids. In this study, 18 salivary fluids and 18 vaginal fluid samples were collected from 18 healthy women of the Han population in Guangdong province, China. The microbes of the above samples were analyzed by 16S rDNA high-throughput sequencing. The results showed that the microbes whose proportions are over 1% in saliva samples distributed across 12 genera and 57 operational taxonomic units (OTUs), and in vaginal fluid distributed across 4 genera and 9 OTUs. The microbes that dominated in saliva were quite different from those dominated in vaginal fluids. The linear discriminant analysis (LDA) effect size (LEfSe) algorithm was used to screen out the specific microbes of the studied samples, and the results showed that the specific microbes in saliva samples are Haemophilus parainfluenzae, Veillonella parvula, and Aggregatibacter segnis, while in vaginal fluid is Lactobacillus iners.

Keywords: 16S rDNA; Body fluid identification; Microbes; Saliva; Vaginal fluid.

MeSH terms

  • Adult
  • Cervix Mucus / microbiology*
  • China
  • DNA, Bacterial / genetics*
  • DNA, Ribosomal / genetics*
  • Discriminant Analysis
  • Ethnicity / genetics
  • Female
  • High-Throughput Nucleotide Sequencing*
  • Humans
  • Middle Aged
  • Polymerase Chain Reaction
  • RNA, Ribosomal, 16S
  • Saliva / microbiology*
  • Sequence Analysis, DNA*
  • Young Adult

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Ribosomal, 16S