Histone H3.3 K27M Accelerates Spontaneous Brainstem Glioma and Drives Restricted Changes in Bivalent Gene Expression

Cancer Cell. 2019 Jan 14;35(1):140-155.e7. doi: 10.1016/j.ccell.2018.11.015. Epub 2018 Dec 27.

Abstract

Diffuse intrinsic pontine gliomas (DIPGs) are incurable childhood brainstem tumors with frequent histone H3 K27M mutations and recurrent alterations in PDGFRA and TP53. We generated genetically engineered inducible mice and showed that H3.3 K27M enhanced neural stem cell self-renewal while preserving regional identity. Neonatal induction of H3.3 K27M cooperated with activating platelet-derived growth factor receptor α (PDGFRα) mutant and Trp53 loss to accelerate development of diffuse brainstem gliomas that recapitulated human DIPG gene expression signatures and showed global changes in H3K27 posttranslational modifications, but relatively restricted gene expression changes. Genes upregulated in H3.3 K27M tumors were enriched for those associated with neural development where H3K27me3 loss released the poised state of apparently bivalent promoters, whereas downregulated genes were enriched for those encoding homeodomain transcription factors.

Keywords: DIPG; H3K27me3; PDGFRA; bivalent; epigenetic; glioma; histone H3 K27M; knockin; mouse; oncohistone.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Brain Stem Neoplasms / genetics*
  • Cell Self Renewal
  • Cells, Cultured
  • Epigenesis, Genetic
  • Gene Expression Profiling / methods*
  • Gene Expression Regulation, Neoplastic
  • Glioma / genetics*
  • Histones / genetics*
  • Histones / metabolism
  • Humans
  • Mice
  • Mutation
  • Neural Stem Cells / cytology
  • Receptor, Platelet-Derived Growth Factor alpha / genetics*
  • Rhombencephalon / pathology
  • Sequence Analysis, RNA / methods
  • Tumor Suppressor Protein p53 / genetics*

Substances

  • Histones
  • TP53 protein, human
  • Tumor Suppressor Protein p53
  • Receptor, Platelet-Derived Growth Factor alpha