WGS to determine the extent of Clostridioides difficile transmission in a high incidence setting in North Wales in 2015

J Antimicrob Chemother. 2019 Apr 1;74(4):1092-1100. doi: 10.1093/jac/dky523.

Abstract

Objectives: Rates of Clostridioides (Clostridium) difficile infection (CDI) are higher in North Wales than elsewhere in the UK. We used WGS to investigate if this is due to increased healthcare-associated transmission from other cases.

Methods: Healthcare and community C. difficile isolates from patients across North Wales (February-July 2015) from glutamate dehydrogenase (GDH)-positive faecal samples underwent WGS. Data from patient records, hospital management systems and national antimicrobial use surveillance were used.

Results: Of the 499 GDH-positive samples, 338 (68%) were sequenced and 299 distinct infections/colonizations were identified, 229/299 (77%) with toxin genes. Only 39/229 (17%) toxigenic isolates were related within ≤2 SNPs to ≥1 infections/colonizations from a previously sampled patient, i.e. demonstrated evidence of possible transmission. Independent predictors of possible transmission included healthcare exposure in the last 12 weeks (P = 0.002, with rates varying by hospital), infection with MLST types ST-1 (ribotype 027) and ST-11 (predominantly ribotype 078) compared with all other toxigenic STs (P < 0.001), and cephalosporin exposure in the potential transmission recipient (P = 0.02). Adjusting for all these factors, there was no additional effect of ward workload (P = 0.54) or failure to meet cleaning targets (P = 0.25). Use of antimicrobials is higher in North Wales compared with England and the rest of Wales.

Conclusions: Levels of transmission detected by WGS were comparable to previously described rates in endemic settings; other explanations, such as variations in antimicrobial use, are required to explain the high levels of CDI. Cephalosporins are a risk factor for infection with C. difficile from another infected or colonized case.

Publication types

  • Historical Article
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Clostridioides difficile / drug effects
  • Clostridioides difficile / genetics*
  • Clostridium Infections / epidemiology*
  • Clostridium Infections / history
  • Clostridium Infections / microbiology
  • Clostridium Infections / transmission*
  • Feces / chemistry
  • Feces / microbiology
  • Female
  • Geography, Medical
  • History, 21st Century
  • Humans
  • Incidence
  • Male
  • Molecular Epidemiology
  • Public Health Surveillance
  • Risk Factors
  • Wales / epidemiology
  • Whole Genome Sequencing*