Design, synthesis, and biologic evaluation of novel galloyl derivatives as HIV-1 RNase H inhibitors

Chem Biol Drug Des. 2019 Apr;93(4):582-589. doi: 10.1111/cbdd.13455. Epub 2019 Jan 24.

Abstract

Human immunodeficiency virus (HIV) reverse transcriptase (RT)-associated ribonuclease H (RNase H) remains as the only enzyme encoded within the viral genome not targeted by current antiviral drugs. In this work, we report the design, synthesis, and biologic evaluation of a novel series of galloyl derivatives with HIV-1 RNase H inhibitory activity. Most of them showed IC50 s at sub- to low-micromolar concentrations in enzymatic assays. The most potent compound was II-25 that showed an IC50 of 0.72 ± 0.07 μM in RNase H inhibition assays carried out with the HIV-1BH10 RT. II-25 was 2.8 times more potent than β-thujaplicinol in these assays. Interestingly, II-25 and other galloyl derivatives were also found to inhibit the HIV IN strand transfer activity in vitro. Structure-activity relationships (SAR) studies and molecular modeling analysis predict key interactions with RT residues His539 and Arg557, while providing helpful insight for further optimization of selected compounds.

Keywords: HIV-1; RNase H inhibitors; galloyl derivatives.

Publication types

  • Research Support, N.I.H., Intramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-HIV Agents / chemical synthesis*
  • Anti-HIV Agents / chemistry
  • Anti-HIV Agents / pharmacology
  • Benzoic Acid / chemistry
  • Binding Sites
  • Catalytic Domain
  • Drug Design*
  • HIV-1 / drug effects
  • HIV-1 / enzymology*
  • Humans
  • Inhibitory Concentration 50
  • Molecular Docking Simulation
  • Ribonuclease H, Human Immunodeficiency Virus / antagonists & inhibitors*
  • Ribonuclease H, Human Immunodeficiency Virus / metabolism
  • Structure-Activity Relationship
  • Tropolone / analogs & derivatives*
  • Tropolone / chemical synthesis
  • Tropolone / chemistry
  • Tropolone / pharmacology

Substances

  • Anti-HIV Agents
  • beta-thujaplicinol
  • Tropolone
  • Benzoic Acid
  • Ribonuclease H, Human Immunodeficiency Virus