RNA Sequencing Provides Insights into the Regulation of Solanesol Biosynthesis in Nicotiana tabacum Induced by Moderately High Temperature

Biomolecules. 2018 Dec 7;8(4):165. doi: 10.3390/biom8040165.

Abstract

Solanesol is a terpene alcohol composed of nine isoprene units that mainly accumulates in solanaceous plants, especially tobacco (Nicotiana tabacum). The present study aimed to investigate the regulation of solanesol accumulation in tobacco leaves induced by moderately high temperature (MHT). Exposure to MHT resulted in a significant increase in solanesol content, dry weight, and net photosynthetic rate in tobacco leaves. In MHT-exposed tobacco leaves, 492 and 1440 genes were significantly up- and downregulated, respectively, as revealed by RNA-sequencing. Functional enrichment analysis revealed that most of the differentially expressed genes (DEGs) were mainly related to secondary metabolite biosynthesis, metabolic pathway, carbohydrate metabolism, lipid metabolism, hydrolase activity, catalytic activity, and oxidation-reduction process. Moreover, 122 transcription factors of DEGs were divided into 22 families. Significant upregulation of N. tabacum 3-hydroxy-3-methylglutaryl-CoA reductase (NtHMGR), 1-deoxy-d-xylulose 5-phosphate reductoisomerase (NtDXR), geranylgeranyl diphosphate synthase (NtGGPS), and solanesyl diphosphate synthase (NtSPS) and significant downregulation of N. tabacum 1-deoxy-d-xylulose 5-phosphate synthase (NtDXS) and farnesyl diphosphate synthase (NtFPS) transcription upon MHT exposure were monitored by quantitative real-time PCR (qRT-PCR). This study indicated that solanesol accumulation in tobacco leaves can be manipulated through regulation of the environmental temperature and established a basis for further elucidation of the molecular mechanism of temperature regulation of solanesol accumulation.

Keywords: Nicotiana tabacum; RNA-sequencing; functional enrichment analysis; gene expression; moderately high temperature; solanesol.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aldose-Ketose Isomerases / genetics
  • Alkyl and Aryl Transferases / genetics
  • Carbohydrate Metabolism / genetics
  • Farnesyltranstransferase / genetics
  • Gene Expression Regulation, Plant / genetics*
  • Geranyltranstransferase / genetics
  • Hot Temperature
  • Hydroxymethylglutaryl CoA Reductases / genetics
  • Lipid Metabolism / genetics
  • Metabolic Networks and Pathways / genetics
  • Nicotiana / enzymology
  • Nicotiana / genetics*
  • Nicotiana / metabolism
  • Sequence Analysis, RNA*
  • Terpenes / chemistry
  • Terpenes / metabolism*

Substances

  • Terpenes
  • Hydroxymethylglutaryl CoA Reductases
  • 1-deoxy-D-xylulose 5-phosphate reductoisomerase
  • Alkyl and Aryl Transferases
  • Geranyltranstransferase
  • Farnesyltranstransferase
  • trans-octaprenyltranstransferase
  • Aldose-Ketose Isomerases
  • solanesol