Integrated comparison of the miRNAome and mRNAome in muscles of dermatomyositis and polymyositis reveals common and specific miRNA-mRNAs

Epigenomics. 2019 Jan;11(1):23-33. doi: 10.2217/epi-2018-0064. Epub 2018 Dec 7.

Abstract

Aim: Dermatomyositis (DM) and polymyositis (PM) are refractory systemic autoimmune diseases with unknown pathogenesis. miRNAs is an important epigenetic mechanism to regulate gene expression.

Methods: We performed whole miRNAs analysis, transcription analysis and the association between miRNAome and mRNAome.

Results: For transcription and miRNAs analysis, there were common and specific mRNAs and miRNAs in the muscles of DM and PM. Among them, the expression levels of miR-196a-5p and CPM were negatively correlated in PM, miR-193b-3p and NECAP2 were negatively correlated in DM and PM. Protein carboxypeptidase M (CPM) plays roles in the degradation of extracellular proteins and in the migration and invasion of cancer cells, and protein NECAP2 plays roles in adaptor protein AP-1-mediated fast recycling from early endosomes. The functions of them in the pathogenesis of DM/PM need further studies.

Conclusion: Our study identified and confirmed differentially miRNAs and mRNAs in DM and PM. Our observations have laid the groundwork for further diagnostic and mechanistic studies of DM and PM.

Keywords: idiopathic inflammatory myopathies; miRNAs; whole-genome transcription.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers
  • Biopsy
  • Case-Control Studies
  • Computational Biology / methods
  • Dermatomyositis / genetics*
  • Dermatomyositis / metabolism
  • Dermatomyositis / pathology
  • Gene Expression Profiling*
  • Gene Expression Regulation
  • Gene Regulatory Networks
  • Genome-Wide Association Study
  • Humans
  • MicroRNAs / genetics*
  • Myoblasts / metabolism
  • Polymyositis / genetics*
  • Polymyositis / metabolism
  • Polymyositis / pathology
  • RNA Interference
  • RNA, Messenger / genetics*
  • Reproducibility of Results
  • Transcriptome*

Substances

  • Biomarkers
  • MicroRNAs
  • RNA, Messenger