Comparative mitogenome analysis of three species and monophyletic inference of Catantopinae (Orthoptera: Acridoidea)

Genomics. 2019 Dec;111(6):1728-1735. doi: 10.1016/j.ygeno.2018.11.027. Epub 2018 Nov 29.

Abstract

To enrich the genomic database of Catantopinae (Orthoptera: Acrididae), mitogenomes of three species from different genera, Traulia nigritibialis (15,701 bp), Choroedocus capensis (16,293 bp) and Stenocatantops splendens (15,574 bp), were characterized and compared with those of other grasshoppers in the subfamily. All 13 protein-coding genes (PCGs) were initiated by ATN codons except COI with ACC (C. capensis and S.splendens) and ND6 with TTG (S. splendens). All transfer RNA (tRNA) genes had a typical clover-leaf structure, except tRNASer(AGN) in which the base pairs of the dihydrouridine (DHU) arm were reduced. The phylogenetic relationships were constructed among 22 species from four subfamiles of Acrididae by classical classifications based on two datasets of their mitogenomes using both Bayesian Inference (BI) and Maximum Likelihood (ML). The phylogenetic analysis confirmed the monophyly of the three other subfamilies, but did not provided support of the monophyly of Catantopinae.

Keywords: Catantopinae; Mitochondrial genome; Orthoptera; Phylogenetic analysis.

Publication types

  • Comparative Study

MeSH terms

  • Animals
  • Genome, Insect*
  • Genome, Mitochondrial*
  • Genomics
  • Grasshoppers / classification
  • Grasshoppers / genetics*
  • Insect Proteins / genetics
  • Mitochondrial Proteins / genetics
  • Phylogeny*
  • RNA, Mitochondrial / genetics
  • RNA, Transfer / genetics
  • Species Specificity

Substances

  • Insect Proteins
  • Mitochondrial Proteins
  • RNA, Mitochondrial
  • RNA, Transfer