Conformational aspects of polymorphs and phases of 2-propyl-1 H-benzimidazole

IUCrJ. 2018 Sep 14;5(Pt 6):706-715. doi: 10.1107/S2052252518011685. eCollection 2018 Nov 1.

Abstract

This paper reports on the polymorphism of 2-propyl-1H-benzimidazole (2PrBzIm) induced by temperature change. Upon heating, an irreversible reconstructive-type phase transition at T = 384 K from the ordered form I (P212121) to a new polymorph, form II HT (Pcam), was observed. The structural transformation between forms I and II involves significant changes in the crystal packing, as well as a key conformational variation around the propyl chain of the molecule. After the first irreversible phase transition, the II HT form undergoes two further (reversible) phase transitions upon cooling at 361 K (II RT) and 181 K (II LT). All three phases (forms II HT, II RT and II LT) have almost identical crystal packing and, given the reversibility of the conversions as a function of temperature, they are referred to as form II temperature phases. They differ, however, with respect to conformational variations around the propyl chain of 2PrBzIm. Energy calculations of the gas-phase conformational energy landscape of this compound about its flexible bonds allowed us to classify the observed conformational variations of all forms into changes and adjustments of conformers. This reveals that forms I and II are related by conformational change, and that two of the form II phases (HT and RT) are related by conformational adjustment, whilst the other two (RT and LT) are related by conformational change. We introduce the term 'conformational phases' for different crystal phases with almost identical packing but showing changes in conformation.

Keywords: conformational changes; energy minimization; molecular crystals; phase transitions; polymorphism.

Grants and funding

This work was funded by Ministerio de Economía y Competitividad grants CTQ2014-56833-R and CTQ2015-63997-C2-2-P. Comunidad de Madrid grant S2013/MIT2841. Goverment of Basque grant IT779-13. Plan de Fortalecimiento de las Capacidades grants UJA2013/08/03, UJA2015/08/07, and UJA2016/08/15. University of Jaen grant . Royal Society grant .