T-ALL leukemia stem cell 'stemness' is epigenetically controlled by the master regulator SPI1

Elife. 2018 Nov 9:7:e38314. doi: 10.7554/eLife.38314.

Abstract

Leukemia stem cells (LSCs) are regarded as the origins and key therapeutic targets of leukemia, but limited knowledge is available on the key determinants of LSC 'stemness'. Using single-cell RNA-seq analysis, we identify a master regulator, SPI1, the LSC-specific expression of which determines the molecular signature and activity of LSCs in the murine Pten-null T-ALL model. Although initiated by PTEN-controlled β-catenin activation, Spi1 expression and LSC 'stemness' are maintained by a β-catenin-SPI1-HAVCR2 regulatory circuit independent of the leukemogenic driver mutation. Perturbing any component of this circuit either genetically or pharmacologically can prevent LSC formation or eliminate existing LSCs. LSCs lose their 'stemness' when Spi1 expression is silenced by DNA methylation, but Spi1 expression can be reactivated by 5-AZ treatment. Importantly, similar regulatory mechanisms may be also present in human T-ALL.

Keywords: bone marrow; cancer biology; human T-ALL cell line; mouse; regenerative medicine; stem cells; thymus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Disease Models, Animal
  • Gene Expression Profiling
  • Gene Expression Regulation*
  • Gene Regulatory Networks
  • Hepatitis A Virus Cellular Receptor 2 / metabolism
  • Mice
  • Neoplastic Stem Cells / physiology*
  • Precursor T-Cell Lymphoblastic Leukemia-Lymphoma / pathology*
  • Proto-Oncogene Proteins / genetics
  • Proto-Oncogene Proteins / metabolism*
  • Sequence Analysis, RNA
  • Trans-Activators / genetics
  • Trans-Activators / metabolism*
  • beta Catenin / metabolism

Substances

  • CTNNB1 protein, mouse
  • Havcr2 protein, mouse
  • Hepatitis A Virus Cellular Receptor 2
  • Proto-Oncogene Proteins
  • Trans-Activators
  • beta Catenin
  • proto-oncogene protein Spi-1

Grants and funding

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.