Environment-specific spectral modeling: A new tool for the analysis of biological specimens

J Biophotonics. 2019 Mar;12(3):e201800217. doi: 10.1002/jbio.201800217. Epub 2018 Nov 26.

Abstract

The recent discovery of fluorescent dyes for improving pathologic tissues identification has highlighted the need of robust methods for performance validation especially in the field of fluorescence-guided surgery. Optical imaging of excised tissue samples is the reference tool to validate the association between dyes localization and the underlying histology in a controlled environment. Spectral unmixing may improve the validation process discriminating dye from endogenous signal. Here, an innovative spectral modeling approach that weights the spectral shifts associated with changes in chemical environment is described. The method is robust against spectral shift variations and its application leads to unbiased spectral weights estimates as demonstrated by numerical simulations. Finally, spectral shifts values computed pixel-wise from spectral images are used to display additional information with potential diagnostic value.

Keywords: Cy5.5; fluorescence-guided surgery; formalin-fixed paraffin tissues; spectral unmixing; targeted contrast agent.

MeSH terms

  • Carbocyanines / chemistry
  • Fluorescent Dyes / chemistry
  • Models, Theoretical*
  • Optical Imaging*
  • Peptides, Cyclic / chemistry

Substances

  • Carbocyanines
  • DA364
  • Fluorescent Dyes
  • Peptides, Cyclic