Structural Insight into a Novel Formyltransferase and Evolution to a Nonribosomal Peptide Synthetase Tailoring Domain

ACS Chem Biol. 2018 Nov 16;13(11):3161-3172. doi: 10.1021/acschembio.8b00739. Epub 2018 Oct 30.

Abstract

Nonribosomal peptide synthetases (NRPSs) increase the chemical diversity of their products by acquiring tailoring domains. Linear gramicidin synthetase starts with a tailoring formylation (F) domain, which likely originated from a sugar formyltransferase (FT) gene. Here, we present studies on an Anoxybacillus kamchatkensis sugar FT representative of the prehorizontal gene transfer FT. Gene cluster analysis reveals that this FT acts on a UDP-sugar in a novel pathway for synthesis of a 7-formamido derivative of CMP-pseudaminic acid. We recapitulate the pathway up to and including the formylation step in vitro, experimentally demonstrating the role of the FT. We also present X-ray crystal structures of the FT alone and with ligands, which unveil contrasts with other structurally characterized sugar FTs and show close structural similarity with the F domain. The structures reveal insights into the adaptations that were needed to co-opt and evolve a sugar FT into a functional and useful NRPS domain.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anoxybacillus / enzymology
  • Crystallography, X-Ray
  • Gene Transfer, Horizontal
  • Hydro-Lyases / chemistry
  • Hydro-Lyases / genetics
  • Hydroxymethyl and Formyl Transferases / chemistry*
  • Hydroxymethyl and Formyl Transferases / genetics
  • Ligands
  • Multigene Family
  • Peptide Synthases / chemistry*
  • Peptide Synthases / genetics
  • Protein Domains
  • Transaminases / chemistry
  • Transaminases / genetics

Substances

  • Ligands
  • Hydroxymethyl and Formyl Transferases
  • Transaminases
  • Hydro-Lyases
  • Peptide Synthases
  • non-ribosomal peptide synthase