Combining genomic analyses with tumour-derived slice cultures for the characterization of an EGFR-activating kinase mutation in a case of glioblastoma

BMC Cancer. 2018 Oct 11;18(1):964. doi: 10.1186/s12885-018-4873-9.

Abstract

Background: Epidermal growth factor receptor (EGFR) gene alterations and amplification are frequently reported in cases of glioblastoma (GBM). However, EGFR-activating mutations that confer proven sensitivity to tyrosine kinase inhibitors (TKIs) in lung cancer have not yet been reported in GBM.

Case presentation: Using next-generation sequencing, array comparative genomic hybridization and droplet digital PCR, we identified the p.L861Q EGFR mutation in a case of GBM for the first time. The mutation was associated with gene amplification. L861Q may be a clinically valuable mutation because it is known to sensitize non-small-cell lung cancers to treatment with the second-generation EGFR TKI afatinib in particular. Furthermore, we used slice culture of the patient's GBM explant to evaluate the tumour's sensitivity to various EGFR-targeting drugs. Our results suggested that the tumour was not intrinsically sensitive to these drugs.

Conclusions: Our results highlight (i) the value of comprehensive genomic analyses for identifying patient-specific, targetable alterations, and (ii) the need to combine genomic analyses with functional assays, such as tumour-derived slice cultures.

Keywords: Activating kinase mutation; Afatinib; EGFR; Glioblastoma; Next-generation sequencing; Tumour-derived slice cultures; Tyrosine kinase inhibitors.

Publication types

  • Case Reports

MeSH terms

  • Aged
  • Brain Neoplasms* / enzymology
  • Brain Neoplasms* / genetics
  • Brain Neoplasms* / therapy
  • Comparative Genomic Hybridization
  • Enzyme Activation / genetics
  • ErbB Receptors / antagonists & inhibitors
  • ErbB Receptors / genetics*
  • Female
  • Glioblastoma* / enzymology
  • Glioblastoma* / genetics
  • Glioblastoma* / therapy
  • Humans
  • Mutation*
  • Polymerase Chain Reaction
  • Protein Kinase Inhibitors / pharmacology
  • Sequence Analysis, DNA
  • Tumor Cells, Cultured

Substances

  • Protein Kinase Inhibitors
  • ErbB Receptors