Identification of a 3'-Untranslated Genetic Variant of RARB Associated With Carotid Intima-Media Thickness in Rheumatoid Arthritis: A Genome-Wide Association Study

Arthritis Rheumatol. 2019 Mar;71(3):351-360. doi: 10.1002/art.40734. Epub 2019 Jan 18.

Abstract

Objective: To investigate the genetic background influencing the development of cardiovascular (CV) disease in patients with rheumatoid arthritis (RA).

Methods: We performed a genome-wide association study (GWAS) in which, after quality control and imputation, a total of 6,308,944 polymorphisms across the whole genome were analyzed in 2,989 RA patients of European origin. Data on subclinical atherosclerosis, obtained through assessment of carotid intima-media thickness (CIMT) and presence/absence of carotid plaques by carotid ultrasonography, were available for 1,355 individuals.

Results: A genetic variant of the RARB gene (rs116199914) was associated with CIMT values at the genome-wide level of significance (minor allele [G] β coefficient 0.142, P = 1.86 × 10-8 ). Interestingly, rs116199914 overlapped with regulatory elements in tissues related to CV pathophysiology and immune cells. In addition, biologic pathway enrichment and predictive protein-protein relationship analyses, including suggestive GWAS signals of potential relevance, revealed a functional enrichment of the collagen biosynthesis network related to the presence/absence of carotid plaques (Gene Ontology no. 0032964; false discovery rate-adjusted P = 4.01 × 10-3 ). Furthermore, our data suggest potential influences of the previously described candidate CV risk loci NFKB1, MSRA, and ZC3HC1 (P = 8.12 × 10-4 , P = 5.94 × 10-4 , and P = 2.46 × 10-4 , respectively).

Conclusion: The present findings strongly suggest that genetic variation within RARB contributes to the development of subclinical atherosclerosis in patients with RA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions / genetics*
  • Adaptor Proteins, Signal Transducing / genetics
  • Adult
  • Arthritis, Rheumatoid / genetics*
  • Arthritis, Rheumatoid / physiopathology*
  • Atherosclerosis / genetics*
  • Carotid Arteries / diagnostic imaging
  • Carotid Intima-Media Thickness*
  • Cell Cycle Proteins / genetics
  • Female
  • Genetic Predisposition to Disease / genetics
  • Genome-Wide Association Study
  • Humans
  • Male
  • Methionine Sulfoxide Reductases / genetics
  • Middle Aged
  • NF-kappa B p50 Subunit / genetics
  • Nuclear Proteins / genetics
  • Receptors, Retinoic Acid / genetics*
  • Risk Factors

Substances

  • 3' Untranslated Regions
  • Adaptor Proteins, Signal Transducing
  • Cell Cycle Proteins
  • NF-kappa B p50 Subunit
  • NFKB1 protein, human
  • Nuclear Proteins
  • Receptors, Retinoic Acid
  • ZC3HC1 protein, human
  • retinoic acid receptor beta
  • Methionine Sulfoxide Reductases
  • methionine sulfoxide reductase