Host range and molecular characterization of a lytic Pradovirus-like Ralstonia phage RsoP1IDN isolated from Indonesia

Arch Virol. 2018 Dec;163(12):3409-3414. doi: 10.1007/s00705-018-4033-1. Epub 2018 Sep 22.

Abstract

A lytic Ralstonia solanacearum-infecting phage designated Ralstonia phage RsoP1IDN was isolated from soil in Indonesia. The phage has a linear double-stranded DNA genome of 41,135 bp with 413-bp terminal repeats, and contains 41 annotated open reading frames. The phage is most closely related to Ralstonia phage RSB1, but different from RSB1 mainly in containing a putative HNH homing endonuclease and having a narrower host range. Our phylogenetic and genomic analyses revealed that both phages RsoP1IDN and RSB1 belong to the genus Pradovirus or a new genus, and not Phikmvvirus as previously reported for phage RSB1. RsoP1IDN is the first sequenced and characterized R. solanacearum-infecting phage isolated from Indonesia in the proposed species Ralstonia virus RsoP1IDN.

Keywords: Bacterial wilt; Phage therapy; Podoviridae; Pradovirus; Ralstonia solanacearum.

MeSH terms

  • Bacteriophages / classification
  • Bacteriophages / genetics*
  • Bacteriophages / isolation & purification*
  • Bacteriophages / physiology
  • Genome, Viral
  • Host Specificity*
  • Indonesia
  • Open Reading Frames
  • Phylogeny
  • Plant Diseases / microbiology
  • Podoviridae / classification
  • Podoviridae / genetics*
  • Podoviridae / isolation & purification
  • Podoviridae / physiology
  • Ralstonia solanacearum / physiology
  • Ralstonia solanacearum / virology*
  • Solanum melongena / microbiology