A differential host response to viral infection defines a subset of earlier-onset diverticulitis patients

J Gastrointestin Liver Dis. 2018 Sep;27(3):249-255. doi: 10.15403/jgld.2014.1121.273.sch.

Abstract

Background and aims: Diverticulitis is the chronic inflammation of diverticula. Whether the pathophysiology of earlier-onset patients differs from later-onset patients is unknown. We profiled the colonic transcriptomes of these two patient populations to gain insight into the molecular underpinnings of diverticulitis.

Methods: We conducted deep RNA sequencing (RNA-seq) on colonic segments surgically resected from earlier-onset (<42 years old, n=13) and later-onset (>65 years old, n=13) diverticulitis patients. We used bioinformatic approaches to cluster the patients based on the relationship of differentially expressed genes and to inform on the molecular pathways that segregated the clusters.

Results: Principal component analysis identified three patient clusters; diverticulitis later-onset (DVT-LO), diverticulitis mixed-onset (DVT-MO), and diverticulitis earlier-onset (DVT-EO). The patients comprising DVT-EO, which was the majority of earlier-onset patients, displayed increased expression of anti-viral response genes. This finding was confirmed using an independent weighted co-expression network analysis (WGCNA) of differentially expressed genes.

Conclusions: We found that the majority of patients with earlier-onset disease contained elevated expression of host genes involved in the anti-viral response. Thus, susceptibility to a viral pathogen may offer one explanation why some individuals develop diverticulitis at an earlier age.

Publication types

  • Comparative Study

MeSH terms

  • Adult
  • Age of Onset
  • Aged
  • Case-Control Studies
  • Diverticulitis, Colonic / diagnosis
  • Diverticulitis, Colonic / epidemiology
  • Diverticulitis, Colonic / genetics*
  • Diverticulitis, Colonic / surgery
  • Female
  • Gene Expression Profiling / methods
  • Gene Expression Regulation
  • High-Throughput Nucleotide Sequencing
  • Host-Pathogen Interactions / genetics*
  • Humans
  • Male
  • Middle Aged
  • Principal Component Analysis
  • RNA, Messenger / genetics*
  • Risk Factors
  • Sequence Analysis, RNA
  • Transcriptome*
  • Virus Diseases / diagnosis
  • Virus Diseases / epidemiology
  • Virus Diseases / genetics*
  • Virus Diseases / virology

Substances

  • RNA, Messenger