Non-canonical translation initiation of the spliced mRNA encoding the human T-cell leukemia virus type 1 basic leucine zipper protein

Nucleic Acids Res. 2018 Nov 16;46(20):11030-11047. doi: 10.1093/nar/gky802.

Abstract

Human T-cell leukemia virus type 1 (HTLV-1) is the etiological agent of adult T-cell leukemia (ATL). The HTLV-1 basic leucine zipper protein (HBZ) is expressed in all cases of ATL and is directly associated with virus pathogenicity. The two isoforms of the HBZ protein are synthesized from antisense messenger RNAs (mRNAs) that are either spliced (sHBZ) or unspliced (usHBZ) versions of the HBZ transcript. The sHBZ and usHBZ mRNAs have entirely different 5'untranslated regions (5'UTR) and are differentially expressed in cells, with the sHBZ protein being more abundant. Here, we show that differential expression of the HBZ isoforms is regulated at the translational level. Translation initiation of the usHBZ mRNA relies on a cap-dependent mechanism, while the sHBZ mRNA uses internal initiation. Based on the structural data for the sHBZ 5'UTR generated by SHAPE in combination with 5' and 3' deletion mutants, the minimal region harboring IRES activity was mapped to the 5'end of the sHBZ mRNA. In addition, the sHBZ IRES recruited the 40S ribosomal subunit upstream of the initiation codon, and IRES activity was found to be dependent on the ribosomal protein eS25 and eIF5A.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Untranslated Regions / genetics
  • Animals
  • Basic-Leucine Zipper Transcription Factors / genetics*
  • Basic-Leucine Zipper Transcription Factors / metabolism
  • COS Cells
  • Chlorocebus aethiops
  • Gene Expression Regulation, Viral
  • HEK293 Cells
  • HeLa Cells
  • Human T-lymphotropic virus 1 / genetics*
  • Human T-lymphotropic virus 1 / metabolism
  • Humans
  • Peptide Chain Initiation, Translational*
  • Protein Isoforms / genetics
  • Protein Isoforms / metabolism
  • RNA Splicing
  • RNA, Messenger / genetics*
  • RNA, Messenger / metabolism
  • RNA, Viral / genetics*
  • RNA, Viral / metabolism
  • Retroviridae Proteins / genetics*
  • Retroviridae Proteins / metabolism

Substances

  • 5' Untranslated Regions
  • Basic-Leucine Zipper Transcription Factors
  • HBZ protein, human T-cell leukemia virus type I
  • Protein Isoforms
  • RNA, Messenger
  • RNA, Viral
  • Retroviridae Proteins