Effects of exogenous microbial inoculum on the structure and dynamics of bacterial communities in swine carcass composting

Can J Microbiol. 2018 Dec;64(12):1042-1053. doi: 10.1139/cjm-2018-0303. Epub 2018 Sep 10.

Abstract

Composting is a widely accepted method for the disposal of deceased livestock. It is a biological self-heating process during which animal carcasses are converted to fertilizer products. Additional inoculants can facilitate the composting progress. This study investigated how the addition of microbial inoculants could improve the composting effectiveness and could change the structure and dynamics of bacterial communities in the carcass composting process. Four strains of Bacillus were inoculated into the swine carcass composting piles. The groups with the additional inoculants showed a higher temperature in the thermophilic phase and higher germination indices in the composted products. The sequencing results showed that the dominant phyla were Proteobacteria, Firmicutes, and Actinobacteria, and the dominant classified genera were Brevibacterium and Bacillus. Canonical correlation analysis showed that temperature and moisture exerted a stronger influence on the bacterial community diversity. The interaction network of dominant genera and the abundance variation of the bacterial community demonstrated that the inoculated bacterial agent changed the structure of bacterial communities and enriched the diversity of the species due to antagonism and symbiosis among the dominant bacterial communities.

Keywords: 16S rRNA high-throughput sequencing; carcasse de porc; compostage; composting; inoculum bactérien; microbial inoculum; swine carcass; séquençage de l’ARNr 16S à haut débit.

MeSH terms

  • Animals
  • Bacteria / isolation & purification*
  • Composting*
  • Microbiota*
  • Swine / microbiology*
  • Temperature