Resonance assignments of wild-type and two cysteine-free variants of the four-helix bundle protein, Rop

Biomol NMR Assign. 2018 Oct;12(2):345-350. doi: 10.1007/s12104-018-9837-0. Epub 2018 Aug 29.

Abstract

Repressor of primer (Rop, or ROM, RNA I modulator) is a 63 amino acid four-helix bundle protein that exists in solution as an anti-parallel homodimer. This protein has been extensively studied, including by X-ray crystallography, NMR, rational design, and combinatorial mutagenesis. Previous NMR experiments with wild-type Rop were carried out at pH 2.3 and pH 6.3. In this paper, we report complete N-H backbone assignments for three variants of Rop under the same pH 6.3 conditions: wild-type Rop; a cysteine-free pseudo-wild type variant (C38A C52V); and a core-repacked variant of the Cys-free variant (T19V L41V C38A C52V). These assignments enable functional and dynamic studies of wild-type and Cys-free variants of Rop.

Keywords: Backbone assignment; Four-helix bundle; NMR; Rop.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics*
  • Cysteine*
  • Mutagenesis*
  • Mutant Proteins / chemistry*
  • Mutant Proteins / genetics*
  • Nuclear Magnetic Resonance, Biomolecular*
  • Protein Conformation, alpha-Helical

Substances

  • Bacterial Proteins
  • Mutant Proteins
  • Cysteine