Rationally designed perturbation factor drives evolution in Saccharomyces cerevisiae for industrial application

J Ind Microbiol Biotechnol. 2018 Oct;45(10):869-880. doi: 10.1007/s10295-018-2057-x. Epub 2018 Aug 3.

Abstract

Saccharomyces cerevisiae strains with favorable characteristics are preferred for application in industries. However, the current ability to reprogram a yeast cell on the genome scale is limited due to the complexity of yeast ploids. In this study, a method named genome replication engineering-assisted continuous evolution (GREACE) was proved efficient in engineering S. cerevisiae with different ploids. Through iterative cycles of culture coupled with selection, GREACE could continuously improve the target traits of yeast by accumulating beneficial genetic modification in genome. The application of GREACE greatly improved the tolerance of yeast against acetic acid compared with their parent strain. This method could also be employed to improve yeast aroma profile and the phenotype could be stably inherited to the offspring. Therefore, GREACE method was efficient in S. cerevisiae engineering and it could be further used to evolve yeast with other specific characteristics.

Keywords: Acetaldehyde; Acetic acid tolerance; DNA polymerase; GREACE method; Saccharomyces cerevisiae.

MeSH terms

  • Acetaldehyde / chemistry
  • Acetic Acid / metabolism
  • Beer
  • DNA Replication
  • DNA-Directed DNA Polymerase / metabolism
  • Directed Molecular Evolution*
  • Fermentation
  • Food Microbiology
  • Genetic Engineering / methods*
  • Genetic Variation
  • Genome, Fungal
  • Industrial Microbiology / methods*
  • Mutation
  • Phenotype
  • Plasmids / metabolism
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / genetics*

Substances

  • Saccharomyces cerevisiae Proteins
  • DNA-Directed DNA Polymerase
  • Acetaldehyde
  • Acetic Acid