Structural and functional characterization of a novel lipolytic enzyme from a Brazilian Cerrado soil metagenomic library

Biotechnol Lett. 2018 Oct;40(9-10):1395-1406. doi: 10.1007/s10529-018-2598-0. Epub 2018 Jul 30.

Abstract

Objective: To isolate putative lipase enzymes by screening a Cerrado soil metagenomic library with novel features.

Results: Of 6720 clones evaluated, Clone W (10,000 bp) presented lipolytic activity and four predicted coding sequences, one of them LipW. Characterization of a predicted esterase/lipase, LipW, showed 28% sequence identity with an arylesterase from Pseudomonas fluorescens (pdb|3HEA) from protein database (PDB). Phylogenetic analysis showed LipW clustered with family V lipases; however, LipW was clustered in different subclade belonged to family V, suggesting a different subgroup of family V. In addition, LipW presented a difference in family V GH motif, a glycine replaced by a serine in GH motif. Estimated molecular weight and stokes radius values of LipW were 29,338.67-29,411.98 Da and 2.58-2.83 nm, respectively. Optimal enzyme activity was observed at pH 9.0-9.5 and at 40 °C. Circular dichroism analysis estimated secondary structures percentages as approximately 45% α-helix and 15% β-sheet, consistent with the 3D structure predicted by homology.

Conclusion: Our results demonstrate the isolation of novel family V lipolytic enzyme with biotechnological applications from a metagenomic library.

Keywords: Cerrado; Lipolytic enzymes; Metagenome; Soil.

MeSH terms

  • Amino Acid Motifs
  • Brazil
  • Circular Dichroism
  • Cloning, Molecular
  • Esterases / chemistry
  • Esterases / genetics*
  • Esterases / metabolism*
  • Metagenome
  • Models, Molecular
  • Molecular Weight
  • Phylogeny
  • Protein Conformation
  • Recombinant Proteins / genetics
  • Recombinant Proteins / isolation & purification
  • Recombinant Proteins / metabolism
  • Soil Microbiology*
  • Spectrometry, Fluorescence

Substances

  • Recombinant Proteins
  • Esterases