MATHT: A web server for comprehensive transcriptome data analysis

Wei Song; Huaping Liu; Jiajia Wang; Yan Kong; Xia Yin; Weidong Zang

doi:10.1016/j.jtbi.2018.07.021

MATHT: A web server for comprehensive transcriptome data analysis

J Theor Biol. 2018 Oct 14:455:140-146. doi: 10.1016/j.jtbi.2018.07.021. Epub 2018 Jul 21.

Authors

Wei Song¹, Huaping Liu¹, Jiajia Wang¹, Yan Kong¹, Xia Yin¹, Weidong Zang²

Affiliations

¹ Eryun (ShangHai) Information Technology Co., Ltd., No. 951 Jianchuan Road, Minhang District, Shanghai 201109, PR China.
² Eryun (ShangHai) Information Technology Co., Ltd., No. 951 Jianchuan Road, Minhang District, Shanghai 201109, PR China. Electronic address: Weidongzang987@163.com.

PMID: 30040963
DOI: 10.1016/j.jtbi.2018.07.021

Abstract

The current software/algorithms for high-throughput sequence data analysis are not user-friendly. We developed MATHT, the Multifaceted Analysis Tool for Human Transcriptome, which is a free web server available at www.biocloudservice.com, to provide more comprehensive and reliable analysis of transcriptome data. The web server provides modules for data preprocessing, differential expression analysis, dataset integration, functional analysis, and network analysis. The sequence and structure analysis module is specially designed for RNA-seq data. MATHT is a user-friendly web server that provides comprehensive analysis of transcriptome data, especially integration analysis using special standardization across different platforms.

Keywords: Integration; Network analysis; Standardization across platforms; Transcriptome data analysis; Web server.

MeSH terms

Algorithms*
Databases, Nucleic Acid*
Humans
Internet*
Transcriptome*
User-Computer Interface*